View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1281_high_21 (Length: 423)
Name: NF1281_high_21
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 52911244 - 52911610
Alignment:
| Q |
29 |
aataggatggaactttgtctcttctcacggccatgtctttcacgcatgtgttctttgtcaaaac-atcgggcccacgcgctgctttgggtacatgggacc |
127 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52911244 |
aatatgattgaactttgtctcttctcacggccatatctttcatgcatgtgttctttgtcaaaactatcgggcccacgcgctgctttgggtacatgggacc |
52911343 |
T |
|
| Q |
128 |
aatcaagtccttcacccatgtggaagcaaaactatccgtatcgggtaaattaatgaagataatctcaattgaggtcaatttgtattttcttaag-tttta |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52911344 |
aatcaagtccttcacccatgtggaagcaaaactatccgtgtcgggtaaattaatgaagataatctcaattgaggtcaatttgtattttcttaagttttta |
52911443 |
T |
|
| Q |
227 |
ctaataaataagcaactcatagtnnnnnnnnnnntcaattactcacagtaatattttcatcaatagttttaatctctataaaaattaaaataaatagagg |
326 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52911444 |
ctaataaataagcaactcatagt-aaaaaaaaaatcaattactcacagtaatattttcatcaatagttttaatctctataaaaattaaaataaatagagg |
52911542 |
T |
|
| Q |
327 |
ttctattgatcaaaatgctataaaacttttgagatttatagaagtgtttataaaaagtgagctcaagg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52911543 |
ttctattgatcaaaatgctataaaacttttgagatttatagaagtgtttataaaaagtgagctcaagg |
52911610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University