View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_24 (Length: 387)
Name: NF1281_high_24
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 27514020 - 27513835
Alignment:
| Q |
85 |
aatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagt |
184 |
Q |
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| T |
27514020 |
aatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagt |
27513921 |
T |
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| Q |
185 |
cgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
272 |
Q |
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| T |
27513920 |
cgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
102 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
197 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
198 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
248 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 27513807 - 27513733
Alignment:
| Q |
282 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaacta |
356 |
Q |
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| T |
27513807 |
atttctgtgttgtcgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaacta |
27513733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 8675102 - 8675172
Alignment:
| Q |
282 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaagac-cttgaaaatacaagggaagttgatga |
351 |
Q |
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| T |
8675102 |
atttctgtgttgttgtagcctccggagaagaaggtgccgaagacgattgagaatacaagggaagttgatga |
8675172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 177 - 360
Target Start/End: Original strand, 39209906 - 39210076
Alignment:
| Q |
177 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn |
276 |
Q |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga--tt |
39210003 |
T |
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| Q |
277 |
nnnnnatttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctg |
360 |
Q |
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| T |
39210004 |
tttttatttctgtgttgttgtagcttccatagaaga-----------accttgaaaatacaagggaagttgatgaaactatctg |
39210076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 39209834 - 39209911
Alignment:
| Q |
73 |
gacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
150 |
Q |
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| T |
39209834 |
gacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
105 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
200 |
Q |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
201 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
248 |
Q |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 24036978 - 24036900
Alignment:
| Q |
283 |
tttctgtgttgttgtagcttccagagaagaaggtgccgaaga-ccttgaaaatacaagggaagttgatgaaactatctg |
360 |
Q |
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| T |
24036978 |
tttctgtgttgttgtagcttccggagaaaaagctgccgaagatgatcgaagatacaagctaagttgatgaaactatctg |
24036900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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