View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_25 (Length: 383)
Name: NF1281_high_25
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 11930094 - 11930450
Alignment:
| Q |
9 |
accacagaggcccttaagcagaaaatatgtgaccaattctaattctaatatatacaataagtctcctcattcaaagattttccataa-----------aa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
11930094 |
accacagaggcccttaagcagaaaatatgtgaccaattctaattctaatatatacaataagtctcctcattcaaagattttccatcagcatataattaaa |
11930193 |
T |
|
| Q |
98 |
actcagttattttcaaagttgacgtggacaataattggataatatctcagacgagtgacttgaccacgaaaattgaacaattattttnnnnnnnttcatt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11930194 |
actcagttattttcaaagttgacgtggacaataattggataatatctcagacgagtgacttgaccacgaaaattgaacaattattttaaaaaatttcatt |
11930293 |
T |
|
| Q |
198 |
cccaccagctcatttgaataaaataatataaaataattataagttaacttgttaaccaactcagatttgtacaaccgacaaattaaattaacaataaaca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11930294 |
cccaccagctcatttgaataaaataatataaaataattataagttaacttgttaaccaactcagatttgtacaaccgacaaattaaattaacaataaaca |
11930393 |
T |
|
| Q |
298 |
attagataatgatcgaaaccctatcgctatgattattttaatttgttactctaaaac |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11930394 |
attagataatgatcgaaaccctatcgctatgattattttaatttgttactctaaaac |
11930450 |
T |
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