View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_high_30 (Length: 349)

Name: NF1281_high_30
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_high_30
NF1281_high_30
[»] chr4 (1 HSPs)
chr4 (39-332)||(45476869-45477160)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 39 - 332
Target Start/End: Complemental strand, 45477160 - 45476869
Alignment:
Q  39 attgttatatatatagggagtgatagaggatgtgtttggtgtctgnnnnnnnaaatgtgatgtagaatttctttttacaatgataattaaatatataaag 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||       || ||||  |||||||||||||||||||||||||||||||||||||||    
T  45477160 attgttatatatatagggagtgatagaggatgtgtttggtgtctgtttttttaagtgtg--gtagaatttctttttacaatgataattaaatatataaag 45477063  T
Q  139 aattggaaaaatgtatcattnnnnnnngtggaaatattacacttgagtccaaatcttaattaaaaagcacataggtctctctttcacccaatgtttatta 238  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45477062 aattggaaaaatgtatcattaaaaaaaatggaaatattacacttgagtccaaatcttaattaaaaagcacatatgtctctctttcacccaatgtttatta 45476963  T
Q  239 cctatgtttcacttcattagaagtgtgaataatctcggtaagaaaagaaggggaagtatgaaaacaatcaatcagacagaagaggatcatttca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45476962 cctatgtttcacttcattagaagtgtgaataatctcggtaagaaaagaaagggaagtatgaaaacaatcaatcagacagaagaggatcatttca 45476869  T

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