View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_36 (Length: 301)
Name: NF1281_high_36
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 47198063 - 47198334
Alignment:
| Q |
1 |
gatcattgccatctgtatgcaggtcactactcaataattataatagcattaattattaataatgaatcattttaatgcataatgcagccgaatcaatgtt |
100 |
Q |
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| T |
47198063 |
gatcattgccatctgtatgcaggtcactactcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgtt |
47198162 |
T |
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| Q |
101 |
aaaatattaaaccaaatacatgaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagt |
200 |
Q |
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| T |
47198163 |
aaaatattaaaccaaatacataaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagt |
47198262 |
T |
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| Q |
201 |
attgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgt |
272 |
Q |
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| T |
47198263 |
attgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgt |
47198334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 47185672 - 47185795
Alignment:
| Q |
149 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
248 |
Q |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
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| Q |
249 |
agtgatcacaggaggtgtgaatgt |
272 |
Q |
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| T |
47185772 |
agtgatcacaggaggtgtgaatgt |
47185795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
157 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
245 |
Q |
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| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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