View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_39 (Length: 285)
Name: NF1281_high_39
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 104 - 285
Target Start/End: Original strand, 54470050 - 54470231
Alignment:
| Q |
104 |
aatttttccttaattcagtcacataactgtatatgcaatatagtgacttagtggattgacacggaagatgaatatattacatgttagaaaaacaaaattg |
203 |
Q |
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| T |
54470050 |
aatttttccttaattcagtcacataactgtatatgcaatatagtgacttagtggattgacacggaagatgaatatattacatgttagaaaaacaaaattg |
54470149 |
T |
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| Q |
204 |
atggaggttatatttaagaaccaaagtgcttcagttatggagtcctccctcgaggggcttcttaaaaatcaacgtagattct |
285 |
Q |
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| T |
54470150 |
atggaggttatatttaagaactaaagtgcttcagttgtggagtcctccctcgaggggcttcttaaaaatcaacgtagattct |
54470231 |
T |
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