View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_48 (Length: 251)
Name: NF1281_high_48
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47197893 - 47197653
Alignment:
| Q |
1 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatccacctttgat |
100 |
Q |
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| T |
47197893 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgatactctccacccatatccacctttgat |
47197794 |
T |
|
| Q |
101 |
tctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattaataatcaaatttaacttactttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47197793 |
tctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattattaatcaaatttaacttactttg |
47197694 |
T |
|
| Q |
201 |
atgtaaaccagttgacgaggtttgctatgaaaattcctatg |
241 |
Q |
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| T |
47197693 |
atgtaaaccagttgacaaggtttgctatgaaaattcctatg |
47197653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47185011 - 47184774
Alignment:
| Q |
1 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatccacctttgat |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |
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| T |
47185011 |
tgttgggagtatcatccactatgagagaccccactgtaagcataactgctggaatgattgctccggccaatgatattctccacccatatccaccttccat |
47184912 |
T |
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| Q |
101 |
tctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattaataatcaaatttaacttactttg |
200 |
Q |
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|||||||| | ||||||||| |||||| | || |||||| | || | ||| || |||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
47184911 |
tctgtttttc-atataaacaattattatagacta-ttcaaagttttcaattaatt-aaaatgttattatgaagattattaatcaaatttaacttactttg |
47184815 |
T |
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| Q |
201 |
atgtaaaccagttgacgaggtttgctatgaaaattcctatg |
241 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
47184814 |
atgtaaaccagttgacaaggtttgctatgaaaattcctatg |
47184774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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