View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_50 (Length: 251)
Name: NF1281_high_50
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_50 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 14544850 - 14544627
Alignment:
| Q |
28 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544850 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
14544751 |
T |
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| Q |
128 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544750 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
14544651 |
T |
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| Q |
228 |
tacaaaatgggagtttgataaaat |
251 |
Q |
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|||||||||||||||||||||||| |
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| T |
14544650 |
tacaaaatgggagtttgataaaat |
14544627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 508364 - 508141
Alignment:
| Q |
28 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508364 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
508265 |
T |
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| Q |
128 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508264 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
508165 |
T |
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| Q |
228 |
tacaaaatgggagtttgataaaat |
251 |
Q |
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|||||||||||||||||||||||| |
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| T |
508164 |
tacaaaatgggagtttgataaaat |
508141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 8241253 - 8241401
Alignment:
| Q |
93 |
aactatcaaagtaattccatccccaacagtccaaagattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgtta |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8241253 |
aactatcaaagtaattccatccccaacagtccaaagattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgtta |
8241352 |
T |
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| Q |
193 |
atagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8241353 |
atagctcccacgtaaataagtagctgtgatgcagctacaaaataggagt |
8241401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 6932300 - 6932077
Alignment:
| Q |
28 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932300 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaa |
6932201 |
T |
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| Q |
128 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932200 |
gattaaaatcttggtaatattcggaactattcatgaacatcacagcaaatgtgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagc |
6932101 |
T |
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| Q |
228 |
tacaaaatgggagtttgataaaat |
251 |
Q |
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|||||||||||||||||||||||| |
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| T |
6932100 |
tacaaaatgggagtttgataaaat |
6932077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 26290973 - 26290751
Alignment:
| Q |
29 |
aaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaag |
128 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26290973 |
aaataattctgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtccaaag |
26290874 |
T |
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| Q |
129 |
attaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26290873 |
attaaaatcttggtaatattcggaactattcatgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagct |
26290774 |
T |
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| Q |
229 |
acaaaatgggagtttgataaaat |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
26290773 |
acaaaatgggagtttgataaaat |
26290751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 9292837 - 9292909
Alignment:
| Q |
179 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9292837 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaat |
9292909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 9195286 - 9195238
Alignment:
| Q |
28 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaa |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9195286 |
caaataattccgtaccatgaagtatctgaaataatagttattagtgaaa |
9195238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 39324403 - 39324494
Alignment:
| Q |
27 |
tcaaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaa |
118 |
Q |
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|||||||||| |||| |||| ||||||| | ||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
39324403 |
tcaaataatttggtacaatgatgtatctggagtaatatttattattgaaacaaaaatacatgtacaaactatcaaaataattccatccccaa |
39324494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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