View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_high_6 (Length: 668)

Name: NF1281_high_6
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_high_6
NF1281_high_6
[»] chr2 (2 HSPs)
chr2 (68-472)||(44188574-44188985)
chr2 (28-71)||(44189016-44189059)
[»] chr3 (1 HSPs)
chr3 (378-472)||(20609999-20610093)
[»] chr4 (2 HSPs)
chr4 (421-472)||(3240442-3240493)
chr4 (404-472)||(26911610-26911678)
[»] chr8 (5 HSPs)
chr8 (421-472)||(32342775-32342826)
chr8 (421-472)||(32355262-32355313)
chr8 (421-472)||(32359380-32359431)
chr8 (421-472)||(32371916-32371967)
chr8 (595-637)||(10233935-10233977)
[»] chr1 (1 HSPs)
chr1 (421-472)||(17874738-17874789)
[»] chr7 (1 HSPs)
chr7 (595-637)||(8336819-8336861)
[»] chr5 (1 HSPs)
chr5 (421-465)||(42615054-42615098)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 68 - 472
Target Start/End: Complemental strand, 44188985 - 44188574
Alignment:
Q  68 tgcaagagaactgtttgatgttaagttgcagatggatgtgatatctctgatcgtaacaaggaagaggaaggtactaaaaccttggtagggaaggagatta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188985 tgcaagagaactgtttgatgttaagttgcagatggatgtgatatctctgatcgtaacaaggaagaggaaggtactaaaaccttggtagggaaggagatta 44188886  T
Q  168 gtgtatttttgggagggagaacaaatattgttattattagaggtttgaatttgagaattatgagtttaaaaatcatgatcattcatataacgaatagtga 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188885 gtgtatttttgggagggagaacaaatattgttattattagaggtttgaatttgagaattatgagtttaaaaatcatgatcattcatataacgaatagtga 44188786  T
Q  268 ctataggaaccttatnnnnnnnncaaccgttaaaagcaattgtcctataaaccccactagctatagtgtcatgtttacacgactaaagatcgtcatcat- 366  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44188785 ctataggaaccttat-aaaaaaacaaccgttaaaagcaattgtcctataaaccccactagctatagtgtcatgtttacacgactaaagatcgtcatcatg 44188687  T
Q  367 -------gggagagagtaggcggagataccacccgactaccttgggcactcacccgggtttaatcgatattttctttatattacgttcaacccaatagcc 459  Q
           |||||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| | |    
T  44188686 ggagagggggagagagtaggcggagataccacccgacgatcttggacactcacccgggcttaatcgatattttctttatattaggttcaacccaattgtc 44188587  T
Q  460 cattaactcactt 472  Q
    |||||||||||||    
T  44188586 cattaactcactt 44188574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 44189059 - 44189016
Alignment:
Q  28 cagtattgtgtttggacgtgagtgtttgatcgagtatgcatgca 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44189059 cagtattgtgtttggacgtgagtgtttgatcgagtatgcatgca 44189016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 472
Target Start/End: Original strand, 20609999 - 20610093
Alignment:
Q  378 ggcggagataccacccgactaccttgggcactcacccgggtttaatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||||||  |||||||||| |||  |||||||| |||| | |||||||||| ||||||||||||  ||||| ||||||||||||||||| |||||    
T  20609999 ggcggagccaccacccgacgaccccgggcactcgcccgagcttaatcgatactttctttatattttgttcagcccaatagcccattaacccactt 20610093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 3240493 - 3240442
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    ||||||||||||||||||| || || |||||||||||||||||||| |||||    
T  3240493 aatcgatattttctttatactaggtccaacccaatagcccattaacccactt 3240442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 26911610 - 26911678
Alignment:
Q  404 ggcactcacccgggtttaatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    ||||||| ||||||   |||||||||||||||||||||| |  ||||| ||||| || |||||||||||    
T  26911610 ggcactcgcccgggcccaatcgatattttctttatattaggcccaaccgaatagtcctttaactcactt 26911678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 32342775 - 32342826
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||||||| ||||||||||||| || ||||||||||| |||||||| |||||    
T  32342775 aatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 32355262 - 32355313
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||||||| ||||||||||||| || ||||||||||| |||||||| |||||    
T  32355262 aatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32355313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 32359380 - 32359431
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||||||| ||||||||||||| || ||||||||||| |||||||| |||||    
T  32359380 aatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32359431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 32371916 - 32371967
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||||||| ||||||||||||| || ||||||||||| |||||||| |||||    
T  32371916 aatcgatactttctttatattaggtccaacccaatagtccattaacccactt 32371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 10233935 - 10233977
Alignment:
Q  595 agttgacagtaacccctgtcctgagcaactccaataacatcta 637  Q
    ||||||||||||||| |||||||| |||||||||| |||||||    
T  10233935 agttgacagtaacccatgtcctgaacaactccaatgacatcta 10233977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 17874738 - 17874789
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaactcactt 472  Q
    |||| ||| |||||||||| || || ||||||||||||||||||||||||||    
T  17874738 aatcaatactttctttatactaggtccaacccaatagcccattaactcactt 17874789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 8336819 - 8336861
Alignment:
Q  595 agttgacagtaacccctgtcctgagcaactccaataacatcta 637  Q
    ||||||||||||||| |||||||| |||||||||| |||||||    
T  8336819 agttgacagtaacccatgtcctgaacaactccaatgacatcta 8336861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 42615098 - 42615054
Alignment:
Q  421 aatcgatattttctttatattacgttcaacccaatagcccattaa 465  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||    
T  42615098 aatcgatactttctttatatttggttcaacccaatagtccattaa 42615054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University