View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_1 (Length: 842)
Name: NF1281_low_1
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 94 - 833
Target Start/End: Complemental strand, 40514165 - 40513438
Alignment:
| Q |
94 |
ttctaaaatgcttttacacgttcttgttcgaatattggtatttgatcagaataagaatagagtgctaattgccttagcgcgttaccatcatcgatatttg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40514165 |
ttctaaaatgcttttacacgttcttgttcgaatattggtatttgaacagaataagaatagagtgctaattgccttagtgcgttaccatcatcgatatttg |
40514066 |
T |
|
| Q |
194 |
tggccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgata |
293 |
Q |
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| T |
40514065 |
tggccacaatacattaaccaattttttcttgttatctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgata |
40513966 |
T |
|
| Q |
294 |
atccaagacctgaaaggtgtgtgtttcctaaattccctcaaataattttcaaaattccaagttatttag--ctaattagtcttcaagtttatgaactttt |
391 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40513965 |
atccaagatctgaaaggtgtgt--ttcctaaattccctcaaataattttcaaaattccaagttatttagtactaattagtcttcaagtttatgaactttt |
40513868 |
T |
|
| Q |
392 |
catattatttttcataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatac |
491 |
Q |
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| T |
40513867 |
cata------------ggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatac |
40513780 |
T |
|
| Q |
492 |
ctgaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagt |
591 |
Q |
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| T |
40513779 |
ctgaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagt |
40513680 |
T |
|
| Q |
592 |
tnnnnnnngagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatcca |
691 |
Q |
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| T |
40513679 |
taaaaaaagagtattagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatcca |
40513580 |
T |
|
| Q |
692 |
ctgttcttttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgt |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513579 |
ctgttcttttatttgccagtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgt |
40513480 |
T |
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| Q |
792 |
tttacatagttcagatttgtatgaagtttcgtacagcctatg |
833 |
Q |
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| T |
40513479 |
tttacatagttcagatttgtatgaagtttcgtacagcttatg |
40513438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 743
Target Start/End: Original strand, 21611600 - 21611734
Alignment:
| Q |
609 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
708 |
Q |
| |
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|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
|
| Q |
709 |
agtggttagagaagaagtttgcattgatattggaa |
743 |
Q |
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| | ||| ||| ||||| |||||||||||||||| |
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| T |
21611700 |
aatagttcaagatgaagtgtgcattgatattggaa |
21611734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 641 - 711
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
641 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
711 |
Q |
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|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
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| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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