View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_13 (Length: 586)
Name: NF1281_low_13
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 79 - 448
Target Start/End: Complemental strand, 40021751 - 40021383
Alignment:
| Q |
79 |
tgtcgttggattagtgcaagatattgatttaatgcagttgttacaagaacgtattcaggatgcgtgtttgatagatattcaagtggtgcctatgggagga |
178 |
Q |
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| T |
40021751 |
tgtcgttggattagtgcaagatattgactcaatgcagttgttacaacaacgcattcaggatgcgtgtttgatagatattcaagtggtgcatgtggaagga |
40021652 |
T |
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| Q |
179 |
gtcatggtttttgttacaacatatggtaataatggggcgaggaaggtgattaatgatgcaattaannnnnnnnagagcatttttcacatattttaaagct |
278 |
Q |
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| T |
40021651 |
gtcatggtttttgttacaacatatggtaataatggggggaggaaggtgattaatgatgcaattgattttttt-agagcatttttcacagattttaaagct |
40021553 |
T |
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| Q |
279 |
tggcacgtaatgacctccaatcgggaaatgataatttggtttcgactctttagaatccctctgcatgcttctgtagttgctcttttacattgactttgaa |
378 |
Q |
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| T |
40021552 |
tggcacctaatgacctccaatcgggaaatgataatttggtttcgactatttggaatccctctccatgcttctgtagttgctcttttacattggttttgaa |
40021453 |
T |
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| Q |
379 |
gatatttgtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaaatttca |
448 |
Q |
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| T |
40021452 |
gatatatgtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaaatttca |
40021383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 495 - 586
Target Start/End: Complemental strand, 40021367 - 40021275
Alignment:
| Q |
495 |
tcatcatataatatcaaattgcagtgaaaataagtctcagcaacataaa-tcatttgtcatatcttaaaaattgaattaaatatgtcaaatta |
586 |
Q |
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| T |
40021367 |
tcatcatataatatcaaattgtagtgaaaataagtctgagcaacataaagtcatttgtcatatcttaaaaattgaactaaacatgtcaaatta |
40021275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 27505050 - 27505092
Alignment:
| Q |
422 |
taattcaacaattaataagaaatttcaagatgttactcttcaac |
465 |
Q |
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| T |
27505050 |
taattcaacaattaa-aagaaatatcaagatgttactcttcaac |
27505092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 40022329 - 40022286
Alignment:
| Q |
10 |
ggcaggggaggtaaagggggtgttgttgtttgaattaccagtgg |
53 |
Q |
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| T |
40022329 |
ggcaagggaggtaaagggggtgttgttgtttgaggtaccagtgg |
40022286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 11262005 - 11262088
Alignment:
| Q |
386 |
gtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaa-atttcaagatgttactcttcaacatt |
468 |
Q |
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| T |
11262005 |
gtaacaccctaaaccctgcatactatttttaaataataattcaacaattaataagaacatttcaggttgttactcttcaacatt |
11262088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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