View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_low_14 (Length: 540)

Name: NF1281_low_14
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_low_14
NF1281_low_14
[»] chr4 (11 HSPs)
chr4 (243-508)||(11106803-11107068)
chr4 (294-508)||(10987093-10987307)
chr4 (108-322)||(11100125-11100339)
chr4 (94-234)||(10987322-10987462)
chr4 (108-198)||(11107074-11107164)
chr4 (380-508)||(11096108-11096236)
chr4 (363-438)||(11100051-11100126)
chr4 (203-270)||(9894793-9894860)
chr4 (21-72)||(11100339-11100391)
chr4 (21-72)||(11107164-11107216)
chr4 (222-275)||(11108681-11108734)
[»] chr8 (2 HSPs)
chr8 (347-432)||(13308578-13308663)
chr8 (198-274)||(13308724-13308800)
[»] chr2 (1 HSPs)
chr2 (399-432)||(15076074-15076107)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 243 - 508
Target Start/End: Complemental strand, 11107068 - 11106803
Alignment:
Q  243 acatagccatgacccatgattgccatttcttcactcctagatgctactagaggtggtggtggcactgttgccgccatttcgagttggacttggttttgaa 342  Q
    |||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11107068 acatggccatgacccataattgccatttcttcactcctagatggtgctagaggtggtggtggcactgttgccgccatttcgagttggacttggttttgaa 11106969  T
Q  343 tagccatgatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatc 442  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11106968 tagccatgatttgattttgatcattgatatcacatgcttccaaacgtctagcaacatccttcaaattgtggtcaatcaaccaagcaagataactcatatc 11106869  T
Q  443 cattgttgacatattgtcgtacacaactctaccttcattgagacattgagacatgattattgtcat 508  Q
    |||||||||||||||||| | |||||||||||||||| | |||||||||| ||||| || ||||||    
T  11106868 cattgttgacatattgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtcat 11106803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 294 - 508
Target Start/End: Complemental strand, 10987307 - 10987093
Alignment:
Q  294 ggtggtggtggcactgttgccgccatttcgagttggacttggttttgaatagccatgatttgattttgatcattgttatcccatgcttccaaacgtctag 393  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10987307 ggtggtggtggtactgttgccgccatttcgagttggactttgttttgaatagccatgatttgattttgatcattgttatcccatgcttccaaacgtctag 10987208  T
Q  394 caacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgttgacatattgtcgtacacaactctaccttcattgagacattgaga 493  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10987207 caacgtccttcaatttatggtcaatcaaccaagcaagataactcatatccattgttgacatattgtcgtgcacaactctaccttcattgagacattgaga 10987108  T
Q  494 catgattattgtcat 508  Q
    |||||||||||||||    
T  10987107 catgattattgtcat 10987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 11100339 - 11100125
Alignment:
Q  108 cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatcaataattgac 207  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||  || |||| |||||||||||||||||||||||||||| |    
T  11100339 cttcaaggtaataaatcaggccaaactccagaattgacctcaccaaatggcactgtccctgtcacattaccagccaccattgagtccatcaataattgtc 11100240  T
Q  208 tttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccatttcttcactcctagatgctactagaggtggtggtggcac 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||||| | ||| ||    
T  11100239 tttgcataatgtcatcattattaataggtatcccaacatggccatcacccataattgccatttcttcactcctagatgctgctagaggtggcgttggtac 11100140  T
Q  308 tgttgccgccatttc 322  Q
    ||||||||| |||||    
T  11100139 tgttgccgcgatttc 11100125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 10987462 - 10987322
Alignment:
Q  94 aaatacatgattttcttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtc 193  Q
    |||||||||||||  ||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||  || |||| ||||||||||||||||    
T  10987462 aaatacatgatttctttcaaggaagtaaatcagaccagactccagaattgacctcaccaaatggcactgtctctgtcacattaccagccaccattgagtc 10987363  T
Q  194 catcaataattgactttgcataatgtcatcattattaatag 234  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10987362 catcaataattgactttgcataatgtcatcattattaatag 10987322  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 11107164 - 11107074
Alignment:
Q  108 cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatca 198  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  11107164 cttcaaggtaataaatgaggccaaactccagaattgacctcaccaaatggcactgtcccttgcagattaccagccaccattgagtccatca 11107074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 380 - 508
Target Start/End: Complemental strand, 11096236 - 11096108
Alignment:
Q  380 ttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgttgacatattgtcgtacacaactctaccttca 479  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||| ||||| ||||| |||   ||||| || |||||||| ||||||| ||||||||    
T  11096236 ttccaaacgtctaccaatgtccttcaaattatggtcaatcaaccaagaaagatcactcaaatcatctgttggcaaattgtcgtgcacaactttaccttca 11096137  T
Q  480 ttgagacattgagacatgattattgtcat 508  Q
    || |||||||||| ||||| || ||||||    
T  11096136 ttaagacattgagtcatgagtaatgtcat 11096108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 11100126 - 11100051
Alignment:
Q  363 tcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactca 438  Q
    |||||||||||||| ||||||||||||||| |||| ||  ||||||| |||||||||||||||| |||||||||||    
T  11100126 tcattgttatcccacgcttccaaacgtctaccaacatcgatcaaattatggtcaatcaaccaagaaagataactca 11100051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 9894793 - 9894860
Alignment:
Q  203 ttgactttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccattt 270  Q
    |||||||| ||| |||||| |||| || ||||  ||||||||||||||||||||||| ||||||||||    
T  9894793 ttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacccatcattgccattt 9894860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 11100391 - 11100339
Alignment:
Q  21 aaaaacaaaatgaccataaaattaaaa-ttgggactaaattgagaaaagatcc 72  Q
    |||||| ||||||||||||||| |||| ||| |||||||||||||||||||||    
T  11100391 aaaaactaaatgaccataaaataaaaaattgagactaaattgagaaaagatcc 11100339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 11107216 - 11107164
Alignment:
Q  21 aaaaacaaaatgaccataaaattaaaa-ttgggactaaattgagaaaagatcc 72  Q
    |||||| |||| |||||||||| |||| |||||||||||||||||||||||||    
T  11107216 aaaaactaaatcaccataaaataaaaaattgggactaaattgagaaaagatcc 11107164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 11108734 - 11108681
Alignment:
Q  222 tcattattaataggtatcccaacatagccatgacccatgattgccatttcttca 275  Q
    |||||||| |||||||| ||| ||| |||| ||||||| |||||||||||||||    
T  11108734 tcattattcataggtattccagcatggccaggacccatcattgccatttcttca 11108681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 13308663 - 13308578
Alignment:
Q  347 catgatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagat 432  Q
    |||||||||||||||| |||| || |||  ||||||||| | |||  ||| |||||||||||| ||||||||||||||||||||||    
T  13308663 catgatttgattttgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagat 13308578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 13308800 - 13308724
Alignment:
Q  198 aataattgactttgcataatgtcatcattattaataggtatcccaacatagccatgacccatgattgccatttcttc 274  Q
    |||||||| |||||||| |||||| ||||  | |||| |||||||| || | |||| ||||| ||||||||||||||    
T  13308800 aataattgtctttgcatgatgtcaccattgctcatagttatcccaaaatggtcatggcccatcattgccatttcttc 13308724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 15076107 - 15076074
Alignment:
Q  399 tccttcaaattgtggtcaatcaaccaagcaagat 432  Q
    ||||||||||| ||||||||||||||||||||||    
T  15076107 tccttcaaattttggtcaatcaaccaagcaagat 15076074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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