View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_15 (Length: 481)
Name: NF1281_low_15
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 112 - 346
Target Start/End: Original strand, 26934872 - 26935106
Alignment:
| Q |
112 |
gaatcaagtgttggtattggatacaaactaatggtggcagttcctgctgagtacaaatttggttacataggtggaggttttctgttggagacaaagacag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26934872 |
gaatcaagtgttggtattggatacaaactaatggtggcagttcctgctgagtacaaatttggttacataggtggaggttttctgttggagacaaagacag |
26934971 |
T |
|
| Q |
212 |
taccaaattttagagttgcattgagttttgaaggtgtaaatggtaaattctcatgctcattgttggtttttcttggtgatgttaaggtttgggattctgg |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26934972 |
taccaaattttagagttgcattgagctttgaaggtgtaaatgggaaattttcatgctcattgttggtttttcttggtgatgttaaggtttgggattctgg |
26935071 |
T |
|
| Q |
312 |
tcattattcaaagttttatgtcactggaaaatgtt |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
26935072 |
tcattattcaaagttttatgtcactggaaaatgtt |
26935106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 26934762 - 26934808
Alignment:
| Q |
3 |
catctccaataat-atctactactattagttccaaagctaaaaataa |
48 |
Q |
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||||||||| ||| ||||||| ||||||||||||||||||||||||| |
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| T |
26934762 |
catctccaaaaattatctactgctattagttccaaagctaaaaataa |
26934808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 476
Target Start/End: Complemental strand, 931512 - 931382
Alignment:
| Q |
348 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
931512 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaaga |
931413 |
T |
|
| Q |
448 |
tctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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| T |
931412 |
tctcatatactgtttgaaaaatgagttattt |
931382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 476
Target Start/End: Original strand, 10607779 - 10607909
Alignment:
| Q |
348 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
447 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10607779 |
actggatttgttcatttgtattccatgttccatgttccttcatggatccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
10607878 |
T |
|
| Q |
448 |
tctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
10607879 |
tctcatatactgtttgaaaaatgagttattt |
10607909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 476
Target Start/End: Original strand, 12589663 - 12589793
Alignment:
| Q |
348 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12589663 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaaga |
12589762 |
T |
|
| Q |
448 |
tctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
12589763 |
tctcatatactgtttgaaaaatgagttattt |
12589793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 476
Target Start/End: Complemental strand, 46764840 - 46764710
Alignment:
| Q |
348 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46764840 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaaga |
46764741 |
T |
|
| Q |
448 |
tctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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| T |
46764740 |
tctcatatactgtttgaaaaatgagttattt |
46764710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 348 - 476
Target Start/End: Original strand, 25655100 - 25655229
Alignment:
| Q |
348 |
actggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25655100 |
actggatttgttcatttgtattccatgttcca-gttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaaga |
25655198 |
T |
|
| Q |
448 |
tctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
25655199 |
tctcatatactgtttgaaaaatgagttattt |
25655229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 352 - 476
Target Start/End: Complemental strand, 11680928 - 11680803
Alignment:
| Q |
352 |
gatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctc |
451 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11680928 |
gatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctc |
11680829 |
T |
|
| Q |
452 |
--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
11680828 |
atatactg-ttgaaaaatgagttattt |
11680803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 352 - 476
Target Start/End: Complemental strand, 11689207 - 11689082
Alignment:
| Q |
352 |
gatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689207 |
gatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctc |
11689108 |
T |
|
| Q |
452 |
--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
11689107 |
atatactg-ttgaaaaatgagttattt |
11689082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 391 - 476
Target Start/End: Original strand, 4371130 - 4371220
Alignment:
| Q |
391 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttcca---aagatctc--atactgtttgaaaaatgagttattt |
476 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
4371130 |
gggtccacctgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattt |
4371220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 4363327 - 4363380
Alignment:
| Q |
391 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaa |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||| ||||||||| |
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|
| T |
4363327 |
gggtccacttgttccccactctttcttcccaattgctcctgctgttgcttccaa |
4363380 |
T |
|
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