View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_17 (Length: 448)
Name: NF1281_low_17
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 30 - 369
Target Start/End: Complemental strand, 35063334 - 35062995
Alignment:
| Q |
30 |
gttaattcgacgggttccaggactgccacgtgtaccgattgttattgaacaaaagtactttctgaaacctttaatctcattactcttgtttgatttattt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35063334 |
gttaattcgacgggttccaggactgccacgtgtaccaattgttattgaacaaaagtactttctgaaacctttaatctcattactcttgtttgatttcttt |
35063235 |
T |
|
| Q |
130 |
accaatgatcatgcattgtgtatgtaactttgtctaaataggcagtcatcaatttttcatactttggcaaaattagaaactgcattgttcatttatgaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35063234 |
accaatgatcatgcattgtgtatgtaactttgtctaaataggcagtcatcaatttttcatactttggcaaaattagaaactgcattgttcatttatgaaa |
35063135 |
T |
|
| Q |
230 |
taaagtgtgttgtgtgttcttgagttgcaactgtattttgctatttgcagacaaggggttgaaaataaggttgtggaaactgaacctaagaacagtacct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35063134 |
taaagtgtgttgtgtgttcttgagttgcaactgtattttgctatttgcagacaaggagttgaaaataaggttgtggaaactgaacctaagaacagtacct |
35063035 |
T |
|
| Q |
330 |
taccggcagattatacatcttccatgcaatatgtaggtct |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
35063034 |
taccggcagattatacatcttccatgcaatatgtaggtct |
35062995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 43024687 - 43024340
Alignment:
| Q |
30 |
gttaattcgacgggttccaggactgccacgtgtaccgattgttattgaacaaaagtactttctgaaacctttaatctcattactcttgtttgatttattt |
129 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43024687 |
gttaattcgacgggttccaggactgccacgtttaccgattgttattgaacaaaagtactttctcaaacctttaatctcattactcttgtttgatttattt |
43024588 |
T |
|
| Q |
130 |
accaatgatcatgcattgtgtatgt------aactttgt-ctaaataggcagtcatcaatttttcatactttggcaaaattagaaactgcattgttcatt |
222 |
Q |
| |
|
||||||||||||||||||||||||| || | || |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
43024587 |
accaatgatcatgcattgtgtatgtgaaataaagtatgaactaaataggcagtcatcaatttgtcatacttaggcaaaattagaaattgcattgttcatg |
43024488 |
T |
|
| Q |
223 |
tatgaaataaagtgtgttgtgtgttcttgagttgcaactgtattttgctatttgcagacaaggggttgaaaataaggttgtggaaactgaacctaagaac |
322 |
Q |
| |
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| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
43024487 |
tgtgaaataaagtatgttgtgtgttcttgagttgtaactttattttgctatttgcagacaagaggttgaaagtaaggttgtggaaactgaacctgagaac |
43024388 |
T |
|
| Q |
323 |
agtaccttaccggcagattatacatcttccatgcaatatgtaggtctc |
370 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43024387 |
agtaccttaccggtagattatacatcttccatgcaatatgtaggtctc |
43024340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 42814341 - 42814003
Alignment:
| Q |
30 |
gttaattcgacgggttccaggactgccacgtgtaccgattgttattgaacaaaagtactttctgaaacctttaatctcattactcttgtttgatttattt |
129 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
42814341 |
gttaattcgacgggttccaggacggccatgtttaccgattgttactgaaaaaaagtactttctcaaacctttaatctcattactcttgtttgatttgttt |
42814242 |
T |
|
| Q |
130 |
accaatgatcatgcattgtgtatgtaactttgtctaaataggcagtcatcaatttttcatactttggcaaaattagaaactgcattgttcatttatgaaa |
229 |
Q |
| |
|
|| ||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
42814241 |
acaaataatcatgcattgtgtatgtaact--gtataaataggcagtcatcaatttgtcatactttggcaaaattagaaactgtattgttcatttgtgaaa |
42814144 |
T |
|
| Q |
230 |
taaagtgtgttgtgtgttcttgagttgcaactgtattttgctatttgcagacaaggggttgaaaataaggttgtggaaactgaacctaagaacagtacct |
329 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
42814143 |
taaagtatgttgtctgttcttgagttgtaactgtattttgctatttgcagacaagagtttgaaaataaggttgtggaaactgaacctgagaatagtacct |
42814044 |
T |
|
| Q |
330 |
taccggcagattatacatcttccatgcaatatgtaggtctc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
42814043 |
taccggcagattatacatcttccatgcaatatgtaagtctc |
42814003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 43024311 - 43024274
Alignment:
| Q |
406 |
attcatattcatttcctaataaattgatattattggac |
443 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| |
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|
| T |
43024311 |
attcatattcatttcctaataaattgataattttggac |
43024274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 434
Target Start/End: Complemental strand, 42813973 - 42813945
Alignment:
| Q |
406 |
attcatattcatttcctaataaattgata |
434 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42813973 |
attcatattcatttcctaataaattgata |
42813945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 41563475 - 41563603
Alignment:
| Q |
242 |
tgtgttcttgagttgcaactgtattttgctatttgcagacaaggggttgaaaataaggttgtggaaactgaacctaagaacagtaccttaccggcagatt |
341 |
Q |
| |
|
||||||||||||| || |||||||||| | ||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||| |||||| || ||| |
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| T |
41563475 |
tgtgttcttgagtcgcggctgtattttgttttttgcagacaaaaggtggaaaataaggtggtggacactgaacctgctaacagtagcttaccagctgatg |
41563574 |
T |
|
| Q |
342 |
atacatcttccatgcaatatgtaggtctc |
370 |
Q |
| |
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||| ||| ||||| |||||||| ||||| |
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| T |
41563575 |
atatgtctgccatgaaatatgtaagtctc |
41563603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 41563245 - 41563322
Alignment:
| Q |
30 |
gttaattcgacgggttccaggactgccacgtgtaccgattgttattgaacaaaagtactttctgaaacctttaatctc |
107 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| ||||||| |||||| |||||| ||| |||||||||||||| |
|
|
| T |
41563245 |
gttaattcgtcgggttccaggacgaccacgtttaccaattgttaccgaacaagagtactatctcaaacctttaatctc |
41563322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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