View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_18 (Length: 444)
Name: NF1281_low_18
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 782551 - 782823
Alignment:
| Q |
30 |
taaagtaaataaatcaaccaaaattaaaggtgcatcttattattaaccagaaaactacaaaagcaagatgaaaattggcaaagatgttggaagtttgggt |
129 |
Q |
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| T |
782551 |
taaagtaaataaatcaaccaaaattaaaggtgcatcttattattaaccagaaaactacaaaagcaagatgaaaattggcaaagatgttggaagtttgggt |
782650 |
T |
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| Q |
130 |
tagatagagacatcgaatcaaaatcataaaatgtaattggtccaaaccatatcaccttatccatatacctaaactcacaccacacattcaaatgctaaaa |
229 |
Q |
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| T |
782651 |
tagatagagacatcgaatcaaaatcataaaatgtaattggtccaaaccatatcaccttatccatatacctaaactcacaccacacattcaaatgctaaaa |
782750 |
T |
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| Q |
230 |
atccatacaaacttttgtttactaatattattca-ttttcatcattcactctcactcacacaaataagcatca |
301 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
782751 |
atccatacaaacttttgtatactaatattattcatttttcatcattcactctcactcacacaaataagcatca |
782823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 332 - 436
Target Start/End: Original strand, 782842 - 782946
Alignment:
| Q |
332 |
aacattcatcaacaacatggcaatggcaactcaagcctctctcttcactccacctctttcaagccctaaaccatggaaacaaccatcaactttatccttc |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
782842 |
aacattcatcaacaacatggcaatggcaactcaagcctctctcttcactccacctctttcaagccctaaaccatggaaacaaccatcaactttatccttc |
782941 |
T |
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| Q |
432 |
atctc |
436 |
Q |
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| T |
782942 |
atctc |
782946 |
T |
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