View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1281_low_19 (Length: 442)
Name: NF1281_low_19
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 27540716 - 27540552
Alignment:
| Q |
75 |
attttacacgaattgaagattgcttggagtagagattttaggaatattcaagtgtacgcagactcatagattacaattaagttgcagactgtctcaccaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27540716 |
attttacacgaattgaagattgcttggagtagagattttaggaatattcaagtgtacgcagactcatagattacaattaagttgcagattgtctcaccaa |
27540617 |
T |
|
| Q |
175 |
atatgggctgaatttggacgctaagttcatgatttttgagttttttcctgccactttgtcaaatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27540616 |
atatgggctgaatttggacgctaagtttatgatttttgagttttctcctgccactttgtcaaatg |
27540552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 27540497 - 27540406
Alignment:
| Q |
294 |
gtctaagacgtagccaattttatttataaaataaaaaggataaacactcgtcttaaatgatagatagatacatgttttccaacttctatatt |
385 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27540497 |
gtctaagacgtagccaattttattcataaaataaaaaagataaacactcgtcttaaatgatagatagatacatgttttccaacttctatatt |
27540406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 11252051 - 11252116
Alignment:
| Q |
95 |
tgcttggagtagagattttaggaatattcaagtgtacgcagact--catagattacaattaagttg |
158 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
11252051 |
tgcttggagtagaggttttaggaatattcaagtgtacgcagacttaaaaagattacaattaagttg |
11252116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University