View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_20 (Length: 440)
Name: NF1281_low_20
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 13714245 - 13714013
Alignment:
| Q |
29 |
aaaacactaccaagagaacagtttcaaactatcagtagtttggattgattacctccacatagttgtgagagggagatgagatatgctgggtattggggtc |
128 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13714245 |
aaaacactaccaagagaaaagtttgaaactatcactagtttggattgattacctccacatagttgtgagagggagattagatatgctgggtattggggtc |
13714146 |
T |
|
| Q |
129 |
cttctcaatgtgaagaaatgttcaagtgttttagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattt |
228 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13714145 |
cttctcaatgcgaagaaatgttcaagtgttttagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattt |
13714046 |
T |
|
| Q |
229 |
tgaagcagccactaaaagaggagctattcccat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
13714045 |
tgaagcagccactaaaagaggagctatttccat |
13714013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 931415 - 931521
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
931415 |
tttggaagcatcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
931514 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
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| T |
931515 |
tataatc |
931521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 10607876 - 10607770
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10607876 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggatccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
10607777 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
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|
| T |
10607776 |
tataatc |
10607770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 12589760 - 12589654
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12589760 |
tttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
12589661 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
|
|
| T |
12589660 |
tataatc |
12589654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 46764743 - 46764849
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46764743 |
tttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
46764842 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
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|
| T |
46764843 |
tataatc |
46764849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 11680835 - 11680941
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
11680835 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtagacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatag |
11680934 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
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|
| T |
11680935 |
tataatc |
11680941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 11689114 - 11689220
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
11689114 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtagacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatag |
11689213 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
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|
| T |
11689214 |
tataatc |
11689220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 25655196 - 25655091
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtag |
425 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25655196 |
tttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaac-tggaacatggaatacaaatgaacaaatccagtag |
25655098 |
T |
|
| Q |
426 |
tataatc |
432 |
Q |
| |
|
||||||| |
|
|
| T |
25655097 |
tataatc |
25655091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 4371184 - 4371130
Alignment:
| Q |
326 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4371184 |
tttggaagcatcagctgcggcaattgggaagaaagagtggggaacaggtggaccc |
4371130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 4363380 - 4363327
Alignment:
| Q |
327 |
ttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccc |
380 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
4363380 |
ttggaagcaacagcaggagcaattgggaagaaagagtggggaacaagtggaccc |
4363327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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