View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_21 (Length: 440)
Name: NF1281_low_21
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 27687088 - 27687490
Alignment:
| Q |
9 |
caacaatattgaactttcgtatcttaaatgtcttggtactcaactccattctttagtaacaatcccttaatgtcttaggtaagtcactaaccatatcgaa |
108 |
Q |
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| T |
27687088 |
caacaaaattgaactttcgtatcttcaatgtcttggtactcaattcgcttctttagtaacaatcccttaatgtcttaggtaagtcgctaaccatt--gaa |
27687185 |
T |
|
| Q |
109 |
gatttgactgtg--ttaaactgacaaccagaacacatattgttgagaacccataacacttgttgaacaaacctagttctgaaaggacagaaccgatatcg |
206 |
Q |
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| T |
27687186 |
gatttgactgtgtgttaaactgacaaccagaacacatatggttgagaacccataacacttgttgaacaaacctagttttgaaaggacagaaccgatatcg |
27687285 |
T |
|
| Q |
207 |
ttaatcaagcgaaatagagaggagaaaacgaaaatacgttttgaattaggtgcagtgcacgatgtagttgtcgagtgagatgaacaaacctagatctaaa |
306 |
Q |
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| T |
27687286 |
tcaatcaagagaaacagagaggagcaaacaaaaacacgttttgaattaggtgcagtgcacgatgtagttgccgggagcaatgaacaaacctacatctgaa |
27687385 |
T |
|
| Q |
307 |
aggacagaactgatatcattaatcaagtgaaacagagaggagtaaacgaaaacacgttttgaattaggtgcagtgcacaacgtagttgccgggagcaatc |
406 |
Q |
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| T |
27687386 |
aggacagaattgatatcgttaatcaagtgaaacagagaggagcaaacgaaaacacgttttgaattaggtgcagtgcacgacgtagttgccgggagcaatc |
27687485 |
T |
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| Q |
407 |
aaacc |
411 |
Q |
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| T |
27687486 |
aaacc |
27687490 |
T |
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