View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_25 (Length: 427)
Name: NF1281_low_25
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 78 - 347
Target Start/End: Original strand, 45477119 - 45477385
Alignment:
| Q |
78 |
acaccaaacacatcctctatcactccctatatatataacaatgaggttgcgctatatgacacaccaccaattcattcattcataaaatatagaaccagca |
177 |
Q |
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| T |
45477119 |
acaccaaacacatcctctatcactccctatatatataacaatgaggttgcactatatgacacaccaccaattcattcattcataaaatatagaaccagca |
45477218 |
T |
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| Q |
178 |
cattagggttcatggcatagcatatcatatcatatcatcatcttgagattttgaatctacgcgccattgctcactattgtttagaagaaattacacttgc |
277 |
Q |
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| T |
45477219 |
ca---gggttcatggcatagcatatcatatcatatcatcatcttgagattttgaatctacgcgccattgctcactattgtttagaagaaattacacttgc |
45477315 |
T |
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| Q |
278 |
acaatcttcactaaaaataattttgcacctgcacttcccagtttacacacgcaacacaatctgagcaaca |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45477316 |
acaatcttcactaaaaataattttgcacctgcacttcccagtttacacacgcaacacaatctgagcaaca |
45477385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 52153025 - 52153102
Alignment:
| Q |
6 |
agaatcggccaactacagaacccacgccagactctctacggcataaaaacaaggcattgataactccaaactacacca |
83 |
Q |
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| T |
52153025 |
agaatcggccaactacagaacccacgccagactctctacggcataaaaacaaggcattgataactccaaactacacca |
52153102 |
T |
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