View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_29 (Length: 399)
Name: NF1281_low_29
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 28421631 - 28421959
Alignment:
| Q |
20 |
ctaatggtaagactctgatgtattatttcatatacaatatcacgtgtaccaaaagtaataataataaaacttaaaaggaacaacacaaagtataaatgga |
119 |
Q |
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| T |
28421631 |
ctaatggtaagactctgatgtattatttcatatacaatatcacgtgtaccaaaagtaataataataaaacttaaaaggaacaacacaaagtataaatgga |
28421730 |
T |
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| Q |
120 |
aaaggacaagggagtgaaagatctcgttctctgaagatattcaatagtggggtgataggaatctaatatcatccaaacacttgaagacaaatccatttca |
219 |
Q |
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| T |
28421731 |
aaaggacaagggagtgaaagatctcgttctctgaagatattcaatagtggggtgataggaatctaatatcatccaaacacttgaagacaaatccatttca |
28421830 |
T |
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| Q |
220 |
gaacatcaattaaagaattctcctttatgtgt--tatttgaaaccattatnnnnnnnttcaacacccaagaggccctagctagactcataaatcatagca |
317 |
Q |
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| T |
28421831 |
gaacatcaattaaagaattctcctttatgtgttatatttgaaaccattataataaaattcaacacccaagagtccctagctagactcataaatcatagca |
28421930 |
T |
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| Q |
318 |
tcatccagtaataaacaggaagaaaaaaa |
346 |
Q |
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| T |
28421931 |
tcatccagtaataaacaggaggaaaaaaa |
28421959 |
T |
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