View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_33 (Length: 375)
Name: NF1281_low_33
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 365
Target Start/End: Original strand, 12810561 - 12810898
Alignment:
| Q |
30 |
cattttactgtcgatatatagttaaggagaaaagtatcactaatannnnnnnaatnnnnnnnnn-ttattattaaggagaaaagtacaaagagtatttga |
128 |
Q |
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| T |
12810561 |
catttcactgtcgatatatagttaaggagaaaagtatcactaatatttttttaatcaaaaaaaaattattattaaggagaaaagtacaaagagtatttga |
12810660 |
T |
|
| Q |
129 |
ctcacaaattgaaaaagtacaatggatactcgactnnnnnnnnnnccccaatcaagaatcaagacaaggaaatgagtttgaaaattgaaaatcactcgta |
228 |
Q |
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| T |
12810661 |
ctcacaaattgaaaaggtacaatggatactcgactaaaaaaaaacccccaatcaagaatcaagacaaggaaatgagtttgaaaattgaaaatcacttgta |
12810760 |
T |
|
| Q |
229 |
acacatacaatgcctccttttttctaactaggaaccacctccaagagttgattttataccctcaat-atttcttccacctcacgtcttttcgaagagaaa |
327 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
12810761 |
acacatacaatatctccttttttctaactaggaaccacctccaagagttgattttataccctcaataatttcttccacctcacatcttttcgaagagaaa |
12810860 |
T |
|
| Q |
328 |
acaacctcatttctagcctcccaaatctttcatattat |
365 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
12810861 |
acaacctcatttctagccttccaaatctttcatattat |
12810898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 94 - 365
Target Start/End: Original strand, 12747544 - 12747817
Alignment:
| Q |
94 |
ttattattaaggagaaaagtacaaagagtatttgactcacaaattgaaaaagtacaatggatactcgactnnnnnnnnnncc-ccaatcaagaatcaaga |
192 |
Q |
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| T |
12747544 |
ttattattaaggagaaaagtacaaagagtatttgactcacaaattaaaaaggtacaatggatactcgactaaaaaaaaaaactccaatcaagaatcaaga |
12747643 |
T |
|
| Q |
193 |
caaggaaatgagtttgaaaattgaaaatcactcgtaacacatacaatgcctccttttttctaactaggaaccacctccaagagttgattttataccctca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12747644 |
caaggaaatgagtttgaaaattgaaaatcactcgtaacacatacaatacctccttttttctaactaggaaccacctccaagagttgattttataccctca |
12747743 |
T |
|
| Q |
293 |
at-atttcttccacctcacgtcttttcgaagagaaaacaacctcatttctagcctcccaaatctttcatattat |
365 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
12747744 |
ataatttcttccacctcacatcttttcgaagagaaaacaacctcatttctagccttccaattctttcatattat |
12747817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 12747493 - 12747522
Alignment:
| Q |
45 |
atatagttaaggagaaaagtatcactaata |
74 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12747493 |
atatagttaaggagaaaagtatcactaata |
12747522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 365
Target Start/End: Complemental strand, 21034149 - 21033992
Alignment:
| Q |
213 |
ttgaaaatcactcgtaacacatacaatgcctcc---ttttttctaactaggaaccacctccaagag-ttgattttataccctcaata-tttcttccacct |
307 |
Q |
| |
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||||||| |||| |||| |||||||||||| || ||| |||| |||||||||||||| ||||| ||||||||||||| || | | |||||||||||| |
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| T |
21034149 |
ttgaaaaccacttgtaatacatacaatgcccccaattttgttctggctaggaaccacctctaagaggttgattttataccatctacaatttcttccacct |
21034050 |
T |
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| Q |
308 |
cacgtcttttcgaagagaaaacaacctcatttctagcctcccaaatctttcatattat |
365 |
Q |
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||| | ||||||||||||||||| | ||||||| || ||||||||||| || ||||| |
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| T |
21034049 |
cacaacatttcgaagagaaaacaatcccatttctggcttcccaaatcttccacattat |
21033992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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