View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_low_34 (Length: 366)

Name: NF1281_low_34
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_low_34
NF1281_low_34
[»] chr5 (2 HSPs)
chr5 (6-294)||(39184736-39185024)
chr5 (152-290)||(8730292-8730428)
[»] chr1 (4 HSPs)
chr1 (141-289)||(42373538-42373685)
chr1 (9-289)||(17032737-17033025)
chr1 (137-289)||(19597952-19598105)
chr1 (139-207)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (133-250)||(16501182-16501300)
chr4 (139-207)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (132-258)||(31902910-31903036)
chr2 (103-258)||(39339357-39339512)
chr2 (152-290)||(25505479-25505615)
chr2 (147-260)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (134-286)||(9519052-9519205)
chr8 (139-201)||(34866640-34866702)
chr8 (147-226)||(10551752-10551832)
chr8 (139-207)||(34389590-34389658)
[»] chr3 (4 HSPs)
chr3 (175-271)||(25595121-25595217)
chr3 (137-258)||(17501759-17501880)
chr3 (147-289)||(5555991-5556135)
chr3 (150-248)||(1653452-1653550)
[»] chr7 (6 HSPs)
chr7 (139-289)||(37792747-37792898)
chr7 (139-201)||(38484991-38485053)
chr7 (103-258)||(47326396-47326551)
chr7 (132-201)||(3420242-3420311)
chr7 (147-250)||(12480298-12480402)
chr7 (139-207)||(38305676-38305744)
[»] chr6 (1 HSPs)
chr6 (139-250)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 39185024 - 39184736
Alignment:
Q  6 ggtactggttttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggttgtttactccggcgacatacgttttct 105  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39185024 ggtactggttttggtgattttgttgctgagatcagcttccattcggtcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttct 39184925  T
Q  106 ccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatag 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  39184924 ccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatat 39184825  T
Q  206 atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatatttttcg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  39184824 atatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcg 39184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 8730292 - 8730428
Alignment:
Q  152 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 251  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  252 gcgtagttttggctctatcgttggcttgtgggtatattt 290  Q
    | |||||| || |||||||||||| | ||||||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatattt 8730428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 42373538 - 42373685
Alignment:
Q  141 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 240  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  241 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatatt 289  Q
    | |||||| | ||||||||||| ||||||| |||| |||||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatatt 42373685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 17032737 - 17033025
Alignment:
Q  9 actggttttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggtt---gtttactccggcgacatacgttttct 105  Q
    ||||||||||||  | ||||||||||||| ||| ||||||  |||||||  ||||||| ||||  ||||||   |||||||||| ||||  | || | ||    
T  17032737 actggttttggttgtgttgttgctgagattggcgtcgattcagtcagttttgcaggttcatggacttggtttttgtttactccgacgacggaagtctcct 17032836  T
Q  106 ccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgtttt-gtagttgtgtttcgtcttcctata 204  Q
    || |||||||||| ||  ||||| | ||||   ||||||||||| |||||| || || |||  | ||  |||||| || ||||  |||||||||||| ||    
T  17032837 ccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctcta 17032936  T
Q  205 gatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatatt 289  Q
    |||||||    || ||||||||  ||||||||||||||| ||||||||||| |||| ||||| |||||||| ||  |||||||| ||||    
T  17032937 gatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttatt 17033025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 19597952 - 19598105
Alignment:
Q  137 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 235  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  236 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatatt 289  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| |||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatatt 19598105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 207  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  133 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 231  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  232 cttggtgaggcggtttggc 250  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 207  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  132 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 230  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  231 tcttggtgaggcggtttggcagcgtagt 258  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  103 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 202  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  203 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 258  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 25505615 - 25505479
Alignment:
Q  152 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 251  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  252 gcgtagttttggctctatcgttggcttgtgggtatattt 290  Q
    | |||||| || |||||||||||| | ||||||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatattt 25505479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  147 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 245  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  246 ttggcagcgtagttt 260  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 286
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  134 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 232  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  233 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 286  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 201  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  147 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 226  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 207  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 25595217 - 25595121
Alignment:
Q  175 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg 271  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg 25595121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  137 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 235  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  236 gtgaggcggtttggcagcgtagt 258  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 5555991 - 5556135
Alignment:
Q  147 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 244  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  245 tttggcagcgtagttttggctctatcgttggcttgtgggtatatt 289  Q
    || ||| || | |||||| |||| ||| ||| |||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatatt 5556135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  150 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 247  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 37792747 - 37792898
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 237  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  238 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatatt 289  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| ||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttatt 37792898  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 201  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  103 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 202  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  203 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 258  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  132 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 201  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  147 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 244  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  245 tttggc 250  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 207  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  139 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 237  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  238 gaggcggtttggc 250  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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