View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_39 (Length: 332)
Name: NF1281_low_39
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 46126338 - 46126557
Alignment:
| Q |
29 |
cacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggacaagggattatataagggggtcaat |
128 |
Q |
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| T |
46126338 |
cacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggataagggattatataagggggtcaat |
46126437 |
T |
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| Q |
129 |
gtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagattt |
228 |
Q |
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| T |
46126438 |
gtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagattt |
46126537 |
T |
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| Q |
229 |
tggagaaatattttcctgag |
248 |
Q |
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|||||||||||||||||||| |
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| T |
46126538 |
tggagaaatattttcctgag |
46126557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 46705061 - 46705225
Alignment:
| Q |
29 |
cacagacgcgactatgctgacactttgtctgactgggctgaaa------aacattttaaaggcaggagaaattaacaaggacaagggattatataagggg |
122 |
Q |
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| T |
46705061 |
cacagacgcgtctatgctggaacgttgtctgactgggctgaaactgaaaaacattttaaaggcaggagaaattaacaagga------------taagggg |
46705148 |
T |
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| Q |
123 |
gtcaatgtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaa |
199 |
Q |
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| T |
46705149 |
gtcaatgtttatgctaaaatgattgaagagtgtgcaggatcagataagattgaaagtttgcaaagctatgataacaa |
46705225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 46131969 - 46132043
Alignment:
| Q |
29 |
cacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaagga |
103 |
Q |
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| T |
46131969 |
cacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaattaacaagga |
46132043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 46132047 - 46132093
Alignment:
| Q |
143 |
gattgaagagtgtgcaggattggataagattgcaagattgcaaagct |
189 |
Q |
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| T |
46132047 |
gattaaagagtgtgcaggattggataagattaaaagattgcaaagct |
46132093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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