View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_40 (Length: 315)
Name: NF1281_low_40
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 9425135 - 9425041
Alignment:
| Q |
164 |
tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggtcagtgatgataagtgacacggacactgtaatattgttg |
258 |
Q |
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| T |
9425135 |
tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggttggtgatgataagtgacaccgacattgtaattttgttg |
9425041 |
T |
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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 9425303 - 9425232
Alignment:
| Q |
93 |
acttcttacagaaatttaacatgaaaatttttgattggagtattctattaaatcataaaattgctaggtgct |
164 |
Q |
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| T |
9425303 |
acttcttaaagaaatttaacatgaaattttttgattggagtattctattaaatcataaaattgctaggtgct |
9425232 |
T |
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