View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_42 (Length: 314)
Name: NF1281_low_42
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 54220742 - 54220442
Alignment:
| Q |
1 |
agagtataaagcaggcattcatcagcattcaacacgatcacgtaaagcttaaaacaaccaatatgctttcttctagacaagagatcattaaagtatataa |
100 |
Q |
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| T |
54220742 |
agagtataaagcaggcattcatcagcattcaacacaatcacgtaaagcttaaaacaaccaatatgctttcttctagacaagagataattaaagtatataa |
54220643 |
T |
|
| Q |
101 |
gaaatatgactttggagatataacttaaaatgagattggggtcgggtagctcaactggtttgagctaag---------------aggaccgatgttcaaa |
185 |
Q |
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| T |
54220642 |
gaaatatgactttggagatataacttaaaatgagattggggtcgggtggctcaactggtttgagctaagagttgaagcagttgaaggaccgatgttcaaa |
54220543 |
T |
|
| Q |
186 |
ccctaatgaaggagaaaataataact-aaaaactaatataataacattttcctacataagaaactcaaaatgagactatttggcacattattagccgatt |
284 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220542 |
ccctaatgaaggagaaaatactaactaaaaaactaatataataacattttcctacataagaaactcaaaatgagactatttggcacattattagccgatt |
54220443 |
T |
|
| Q |
285 |
g |
285 |
Q |
| |
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| |
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|
| T |
54220442 |
g |
54220442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 13607877 - 13607905
Alignment:
| Q |
140 |
ggtcgggtagctcaactggtttgagctaa |
168 |
Q |
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| T |
13607877 |
ggtcgggtagctcaactggtttgagctaa |
13607905 |
T |
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