View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_low_49 (Length: 301)

Name: NF1281_low_49
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_low_49
NF1281_low_49
[»] chr1 (2 HSPs)
chr1 (83-205)||(7555139-7555261)
chr1 (144-201)||(19467428-19467485)
[»] chr6 (12 HSPs)
chr6 (82-192)||(9412064-9412174)
chr6 (142-192)||(28935338-28935388)
chr6 (89-192)||(11936044-11936147)
chr6 (89-192)||(11948024-11948127)
chr6 (144-192)||(6423907-6423955)
chr6 (142-189)||(6417092-6417139)
chr6 (83-192)||(6596241-6596347)
chr6 (161-204)||(7132324-7132367)
chr6 (161-204)||(7135247-7135290)
chr6 (161-204)||(7138170-7138213)
chr6 (144-192)||(6395539-6395587)
chr6 (144-184)||(6427183-6427223)
[»] chr4 (9 HSPs)
chr4 (86-204)||(8186353-8186471)
chr4 (82-192)||(1755493-1755603)
chr4 (83-191)||(571271-571379)
chr4 (144-192)||(661860-661908)
chr4 (142-201)||(553759-553818)
chr4 (140-188)||(3437630-3437678)
chr4 (83-177)||(7225182-7225275)
chr4 (155-204)||(1495679-1495728)
chr4 (140-189)||(55907684-55907733)
[»] chr8 (8 HSPs)
chr8 (83-187)||(32151909-32152013)
chr8 (142-187)||(17642946-17642991)
chr8 (142-189)||(17635665-17635712)
chr8 (90-192)||(28246064-28246166)
chr8 (126-191)||(21236138-21236203)
chr8 (140-192)||(5766611-5766663)
chr8 (140-192)||(14004141-14004193)
chr8 (143-191)||(18318650-18318698)
[»] chr3 (4 HSPs)
chr3 (89-192)||(1657474-1657577)
chr3 (86-196)||(51113199-51113309)
chr3 (147-196)||(51120658-51120707)
chr3 (82-204)||(13469643-13469765)
[»] chr7 (4 HSPs)
chr7 (142-189)||(10615713-10615760)
chr7 (82-184)||(7977813-7977915)
chr7 (142-201)||(10169047-10169106)
chr7 (142-201)||(10176572-10176631)
[»] chr5 (3 HSPs)
chr5 (120-189)||(41900503-41900572)
chr5 (142-201)||(28532813-28532872)
chr5 (120-171)||(32268513-32268564)
[»] chr2 (1 HSPs)
chr2 (140-189)||(1036620-1036669)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 7555139 - 7555261
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555139 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 7555238  T
Q  183 aagctcgcaatccaattgcaggg 205  Q
    |||||||||||||||||||||||    
T  7555239 aagctcgcaatccaattgcaggg 7555261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  144 aacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgc 201  Q
    |||||||||| ||||| ||||||||||||||||| | |||| ||||||| ||| ||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 9412064 - 9412174
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggag 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||  |||||| ||||||||||||||||||||||||||||    
T  9412064 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgaggaagtgaatgaggttaaagttgtaatattttgggag 9412163  T
Q  182 aaagctcgcaa 192  Q
    |||||||||||    
T  9412164 aaagctcgcaa 9412174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 28935338 - 28935388
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  28935338 ggaacatgtgagtgaggttaaagttgtaatgttttgggagaaggctcgcaa 28935388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 11936147 - 11936044
Alignment:
Q  89 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctc 188  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| ||||||||| || |||| ||||| |||||||||     
T  11936147 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaatttttaatgttttgagagaaagctt 11936048  T
Q  189 gcaa 192  Q
    ||||    
T  11936047 gcaa 11936044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 11948127 - 11948024
Alignment:
Q  89 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctc 188  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| ||||||||| || |||| ||||| |||||||||     
T  11948127 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaatttttaatgttttgagagaaagctt 11948028  T
Q  189 gcaa 192  Q
    ||||    
T  11948027 gcaa 11948024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 6423907 - 6423955
Alignment:
Q  144 aacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    |||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaa 6423955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 6417092 - 6417139
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    |||||||||||| ||||| ||||||||| | |||||||||||||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcg 6417139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 6596347 - 6596241
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 182  Q
    ||||| |||||||| |||||||||||||||||||||||  | | || | | |   || | ||||||||||| ||||| |||||||| || ||||||||||    
T  6596347 agcaatgggaaacaatcagcaatgagtaacaagtcatttttgtagagaaagt---ttatagaacaagtgagagaggtcaaagttgttatgttttgggaga 6596251  T
Q  183 aagctcgcaa 192  Q
    || |||||||    
T  6596250 aaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 7132324 - 7132367
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaatccaattgcagg 204  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||    
T  7132324 aaagttgtaatgttttgggagaaagctcgcaacccatttgcagg 7132367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 7135247 - 7135290
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaatccaattgcagg 204  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||    
T  7135247 aaagttgtaatgttttgggagaaagctcgcaacccatttgcagg 7135290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 7138170 - 7138213
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaatccaattgcagg 204  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||    
T  7138170 aaagttgtaatgttttgggagaaagctcgcaacccatttgcagg 7138213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 6395539 - 6395587
Alignment:
Q  144 aacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    ||||| |||| ||||| |||||||||||||||||||||| |||| ||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaa 6395587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 6427183 - 6427223
Alignment:
Q  144 aacaagtgagtgaggttaaagttgtaatattttgggagaaa 184  Q
    ||||||||||  |||| ||||||||||||||||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaa 6427223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 8186471 - 8186353
Alignment:
Q  86 aaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaag 185  Q
    ||||| ||||| || || ||||| || | |||| ||||||||||||| || || |||||||| ||||||||||| ||||||||||||||| |||||| |     
T  8186471 aaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaa 8186372  T
Q  186 ctcgcaatccaattgcagg 204  Q
    ||||||||||| |||||||    
T  8186371 ctcgcaatccatttgcagg 8186353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 1755493 - 1755603
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggag 181  Q
    ||||||||||||||| ||||||||||| || ||||||||| ||| || |  | | || |||||||| ||||| ||||| ||||||||||| ||||| |||    
T  1755493 aagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttgagag 1755592  T
Q  182 aaagctcgcaa 192  Q
    |||||| ||||    
T  1755593 aaagcttgcaa 1755603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 571271 - 571379
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 182  Q
    |||||||||||||| || |  ||||| ||||||||  || || ||||||||||| | | ||||||| |||| || || ||||||||||||||||||||||    
T  571271 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttgggaga 571370  T
Q  183 aagctcgca 191  Q
    | |||||||    
T  571371 atgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 661860 - 661908
Alignment:
Q  144 aacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  661860 aacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaa 661908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgc 201  Q
    |||||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 3437678 - 3437630
Alignment:
Q  140 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctc 188  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||||||    
T  3437678 ttggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 7225275 - 7225182
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttg 177  Q
    |||||||||||||| || || ||||| |||| |||| ||||| ||| |||||  || | |||||| ||||| ||||| |||||||||||||||||    
T  7225275 agcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatgt-ggaacatgtgagagaggtcaaagttgtaatattttg 7225182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 1495728 - 1495679
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagg 204  Q
    ||||||||||||||||| ||||||||||||  ||||||||| || |||||    
T  1495728 gaggttaaagttgtaattttttgggagaaatatcgcaatcctatagcagg 1495679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 55907733 - 55907684
Alignment:
Q  140 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    ||||||||| |||| ||  | |||||||||||||||||||||||||||||    
T  55907733 ttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 32151909 - 32152013
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 182  Q
    |||||||||||||| || |||||||| ||||||||  ||| ||||| |||||  ||    ||||||||||| ||||| ||||||||||| ||||||||||    
T  32151909 agcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttgtaatgttttgggaga 32152008  T
Q  183 aagct 187  Q
    |||||    
T  32152009 aagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 17642991 - 17642946
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagct 187  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagct 17642946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 17635712 - 17635665
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    |||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcg 17635665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 28246166 - 28246064
Alignment:
Q  90 ggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    ||||||| ||| ||||||| |||| |||| ||| ||||||||| || ||   |||||  ||||| |||||||||||| |||| ||||| ||||||||| |    
T  28246166 ggaaacaatcaacaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacgcgtgagagaggttaaagttttaatgttttgagagaaagcttg 28246067  T
Q  190 caa 192  Q
    |||    
T  28246066 caa 28246064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 21236138 - 21236203
Alignment:
Q  126 tgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgca 191  Q
    ||||||||||| | | ||||||| |||| || || ||||||||| ||||||||||||| |||||||    
T  21236138 tgatagaatccttgtaggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcgca 21236203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 5766663 - 5766611
Alignment:
Q  140 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    ||||||||| | |||||||| ||||||||||| || || ||||||||||||||    
T  5766663 ttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaa 5766611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 14004141 - 14004193
Alignment:
Q  140 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 192  Q
    ||||||||| | |||||||| ||||||||||| || || ||||||||||||||    
T  14004141 ttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaa 14004193  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 18318698 - 18318650
Alignment:
Q  143 gaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgca 191  Q
    ||||| ||||||||||| |||||||||||||||| | ||||| ||||||    
T  18318698 gaacatgtgagtgaggtcaaagttgtaatatttttgcagaaaactcgca 18318650  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 1657474 - 1657577
Alignment:
Q  89 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctc 188  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| |||||||||||| |||| ||||| |||||||||     
T  1657474 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaagttttaatgttttgagagaaagctt 1657573  T
Q  189 gcaa 192  Q
    ||||    
T  1657574 gcaa 1657577  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 51113309 - 51113199
Alignment:
Q  86 aaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaag 185  Q
    |||||||| |||||||| ||||  ||||||||  |||| |||||| ||   || |  ||||||||||| ||||| | ||||||||||||||  |||||||    
T  51113309 aaagggaagcattcagcgatgaccaacaagtcggtgctgttgatacaacttatgtgcgaacaagtgagagaggtcagagttgtaatattttccgagaaag 51113210  T
Q  186 ctcgcaatcca 196  Q
    |||||||||||    
T  51113209 ctcgcaatcca 51113199  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 51120707 - 51120658
Alignment:
Q  147 aagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatcca 196  Q
    |||||||||| || |||||||||| |||||| ||||||||||||||||||    
T  51120707 aagtgagtgaagtcaaagttgtaacattttgagagaaagctcgcaatcca 51120658  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 13469765 - 13469643
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggag 181  Q
    |||||| || |||||||| ||||| || |||| |||| ||||||||| |  | | || | |||||||||||| ||||| |  |||||| | |||||||||    
T  13469765 aagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggag 13469666  T
Q  182 aaagctcgcaatccaattgcagg 204  Q
    |||||||| || ||| |||||||    
T  13469665 aaagctcgtaacccatttgcagg 13469643  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 10615713 - 10615760
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcg 10615760  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 7977813 - 7977915
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggag 181  Q
    ||||||||||||||| || || ||||| |||| ||  ||| |||| ||||| || || || |||||  |||||||||| ||||||| |||||||||||||    
T  7977813 aagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttgcaatattttgggag 7977912  T
Q  182 aaa 184  Q
    |||    
T  7977913 aaa 7977915  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 10169106 - 10169047
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgc 201  Q
    |||||||||||| ||||| |||||| |||||||||| |||||| ||||||| ||| ||||    
T  10169106 ggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 10176631 - 10176572
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgc 201  Q
    |||||||||||| ||||| |||||| |||||||||| |||||| ||||||| ||| ||||    
T  10176631 ggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 41900572 - 41900503
Alignment:
Q  120 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    ||||||||||| ||| ||||| | |||||||||| ||||| ||||||||||| |||| ||| ||||||||    
T  41900572 tgctattgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 28532813 - 28532872
Alignment:
Q  142 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgc 201  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| ||||    
T  28532813 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 28532872  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 32268513 - 32268564
Alignment:
Q  120 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 171  Q
    ||||||||||| | | |||||||||||||||||| ||||| |||||||||||    
T  32268513 tgctattgatatattgcattttggaacaagtgagagaggtcaaagttgtaat 32268564  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 1036669 - 1036620
Alignment:
Q  140 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcg 189  Q
    ||||||||| |||| || || |||||||||||||||||||||||||||||    
T  1036669 ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 1036620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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