View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_50 (Length: 294)
Name: NF1281_low_50
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 47198768 - 47198946
Alignment:
| Q |
13 |
aatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagt |
112 |
Q |
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| T |
47198768 |
aatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagt |
47198867 |
T |
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| Q |
113 |
t---agaagtattactttgcaatc-tttaaattagaaaaggatctttagtggattataatagatccttgccatttagctt |
188 |
Q |
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| T |
47198868 |
tagaagaagtattac-ttgcaatcttttaaattagaaaaggatctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 47186229 - 47186309
Alignment:
| Q |
13 |
aatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
93 |
Q |
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| T |
47186229 |
aatatacccattgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 10233935 - 10233977
Alignment:
| Q |
221 |
agttgacagtaacccttgtcctgaacaactccaataacatcta |
263 |
Q |
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| T |
10233935 |
agttgacagtaacccatgtcctgaacaactccaatgacatcta |
10233977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 8336819 - 8336861
Alignment:
| Q |
221 |
agttgacagtaacccttgtcctgaacaactccaataacatcta |
263 |
Q |
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| T |
8336819 |
agttgacagtaacccatgtcctgaacaactccaatgacatcta |
8336861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 748431 - 748369
Alignment:
| Q |
16 |
atacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
78 |
Q |
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| T |
748431 |
ataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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