View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_52 (Length: 289)
Name: NF1281_low_52
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 1334264 - 1334061
Alignment:
| Q |
44 |
aaagagacaagcactcatatcaaattcttgtttgatcaaaacaaagtaagtctatgctaaagagactctgcatttaacaaaattaatctcaaatataaac |
143 |
Q |
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| T |
1334264 |
aaagagacaatcactcatatcaaattcttgtttgatcaaaacaaagtaagtctatgctaaagagactctgcatttaacaaaattaatctcaaatataaac |
1334165 |
T |
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| Q |
144 |
ttgataaatgcaatttcgtaagtgaacttttcctttgacgagaacattcttaactttgataaaaacattaataatttaatttgctcgttaaataggtgga |
243 |
Q |
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| T |
1334164 |
ttgataaatgcaatttcgtaagtgaacttttcctttgacgagaacattcttaactttgacaaaaacattaataatttaatttgctcgttaaataggtgga |
1334065 |
T |
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| Q |
244 |
tatt |
247 |
Q |
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|||| |
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| T |
1334064 |
tatt |
1334061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 1334286 - 1334257
Alignment:
| Q |
80 |
caaaacaaagtaagtctatgctaaagagac |
109 |
Q |
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| T |
1334286 |
caaaacaaagtaagtctatgctaaagagac |
1334257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Complemental strand, 32895480 - 32895449
Alignment:
| Q |
246 |
ttattgttatgtatctctatttatgtgagaat |
277 |
Q |
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| T |
32895480 |
ttattgttatgtatctctatttatgtgagaat |
32895449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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