View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1281_low_53 (Length: 289)
Name: NF1281_low_53
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 44771725 - 44771547
Alignment:
| Q |
67 |
agttgtcgctgactgataaattgcaagtctccttgttgacaataagctattgtccgccgtgctgtagctgcatttgagctgggagcccaaattagttttg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44771725 |
agttgtcgctgactgataaattgcaagtctccttgttgacaataagctattgtccgccgtgctgtagctgcatttgagctgggagcccaaattagttttg |
44771626 |
T |
|
| Q |
167 |
aagttctcaacattcaacgtatatatggtcctccaaccaaaaaagtaatgaaaataaaattaacttttatatttttcga |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
44771625 |
aagttctcaacattcaacgtatatatggtcctccaaccaaaaaagtaatgaaaataaaattaacttttattttgttcga |
44771547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University