View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_56 (Length: 285)
Name: NF1281_low_56
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 2449325 - 2449565
Alignment:
| Q |
17 |
tcacgaaggtgagccggttgatgagttatacatatgtgctacattggctgctgttctggctgccgggtttgtcacagatgctattggaattcatgccatg |
116 |
Q |
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| T |
2449325 |
tcacgaaggtgagccggttgatgagttatacatatgtgctacattggctgctgttctggctgccgggtttgtcacggatgctattggaattcatgccatg |
2449424 |
T |
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| Q |
117 |
tttggcgcgtttgtttttggaattttggttccaaaagatggagcgtttgccggtgctcttgtggagaaaatagaggatcttgtgtctggtctattactcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2449425 |
tttggcgcgtttgtttttggaattttggttccaaaagatggagcgtttgccggtgctcttgtggagaaaatagaggatcttgtgtctggtctattactcc |
2449524 |
T |
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| Q |
217 |
cactctattttgtgtctagtggattgaagaccgacatagct |
257 |
Q |
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| T |
2449525 |
cactctattttgtgtctagtggattgaagaccgacatagct |
2449565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 2460347 - 2460583
Alignment:
| Q |
21 |
gaaggtgagccggttgatgagttatacatatgtgctacattggctgctgttctggctgccgggtttgtcacagatgctattggaattcatgccatgtttg |
120 |
Q |
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| T |
2460347 |
gaaggtgagccggttgatgagttatacatatgtgctacattagctgctgttctggctgccgggtttgtcacggatgctattggaattcatgccatgtttg |
2460446 |
T |
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| Q |
121 |
gcgcgtttgtttttggaattttggttccaaaagatggagcgtttgccggtgctcttgtggagaaaatagaggatcttgtgtctggtctattactcccact |
220 |
Q |
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| T |
2460447 |
gcgcgtttgtttttggaattttggttccaaaagatggagcatttgccggtgctcttgtggagaaaatagaggatcttgtgtctggtctattactcccact |
2460546 |
T |
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| Q |
221 |
ctattttgtgtctagtggattgaagaccgacatagct |
257 |
Q |
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| T |
2460547 |
ttattttgtgtcaagtggattgaagaccgacatagct |
2460583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 2444575 - 2444807
Alignment:
| Q |
21 |
gaaggtgagccggttgatgagttatacatatgtgctacattggctgctgttctggctgccgggtttgtcacagatgctattggaattcatgccatgtttg |
120 |
Q |
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| T |
2444575 |
gaaggtgagccggtcgatgagttatacatatgtgctacattagcttctgttctggctgctgggtttgtcacagatgctattggaattcatgccatgtttg |
2444674 |
T |
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| Q |
121 |
gcgcgtttgtttttggaattttggttccaaaagatggagcgtttgccggtgctcttgtggagaaaatagaggatcttgtgtctggtctattactcccact |
220 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| | ||| | |||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
2444675 |
gcgcttttgtttttggaattttggttccaaaagacggaccattttctggtgctcttgtggagaaaatagaggatcttgtctctggtttattgctcccact |
2444774 |
T |
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| Q |
221 |
ctattttgtgtctagtggattgaagaccgacat |
253 |
Q |
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| T |
2444775 |
ttattttgtgtcaagtggattgaagaccaacat |
2444807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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