View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_61 (Length: 273)
Name: NF1281_low_61
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 45477160 - 45476957
Alignment:
| Q |
39 |
attgttatatatatagggagtgatagaggatgtgtttggtgtctgnnnnnnnaaatgtgatgtagaatttctttttacaatgataattaaatatataaag |
138 |
Q |
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| T |
45477160 |
attgttatatatatagggagtgatagaggatgtgtttggtgtctgtttttttaagtgtg--gtagaatttctttttacaatgataattaaatatataaag |
45477063 |
T |
|
| Q |
139 |
aattggaaaaatgtatcattnnnnnnngtggaaatattacacttgagtccaaatcttaattaaaaagcacataggtctctctttcacccaatgtttatta |
238 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45477062 |
aattggaaaaatgtatcattaaaaaaaatggaaatattacacttgagtccaaatcttaattaaaaagcacatatgtctctctttcacccaatgtttatta |
45476963 |
T |
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| Q |
239 |
cctatg |
244 |
Q |
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|||||| |
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| T |
45476962 |
cctatg |
45476957 |
T |
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