View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_65 (Length: 262)
Name: NF1281_low_65
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 6273386 - 6273576
Alignment:
| Q |
24 |
acattttgtgaagagcttagaatatctaaactttgaaatggccaaagatcaaggagaagttcaattattgggtgtaggaggaagtccatttgttcgaagg |
123 |
Q |
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| T |
6273386 |
acattttgtgaagagcttagaatatctaaacgttgaaatggccaaagatcaaggagaagttcaattgttaggtgtaggaggaagcccatttgttcgaagg |
6273485 |
T |
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| Q |
124 |
gtgcaaattgctctaaaactaaagggtattgaatacacttacattgaagaaaatctaaggaacaaaagtgatcttcttcttaagtataatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6273486 |
gtgcaaattgctctaaaactaaagggtattgaatacacttacattgaagaaaatttaaggaacaaaagtgatcttcttcttaagtataatc |
6273576 |
T |
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