View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281_low_66 (Length: 261)

Name: NF1281_low_66
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281_low_66
NF1281_low_66
[»] chr8 (5 HSPs)
chr8 (1-68)||(43538968-43539035)
chr8 (145-191)||(43539143-43539189)
chr8 (145-191)||(59590-59636)
chr8 (192-234)||(10233935-10233977)
chr8 (145-191)||(43539839-43539885)
[»] chr4 (1 HSPs)
chr4 (145-191)||(29980287-29980333)
[»] scaffold0419 (1 HSPs)
scaffold0419 (7-63)||(12444-12500)
[»] scaffold0277 (2 HSPs)
scaffold0277 (7-63)||(8842-8898)
scaffold0277 (14-63)||(17599-17648)
[»] chr6 (2 HSPs)
chr6 (7-58)||(28777400-28777451)
chr6 (7-50)||(28799112-28799155)
[»] chr7 (1 HSPs)
chr7 (192-234)||(8336819-8336861)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43538968 - 43539035
Alignment:
Q  1 ctaaatataacaccaaaacacgccaataatgtttaagaaagcaatgtgaatccataatatgctatatc 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43538968 ctaaatataacaccaaaacacgtcaataatgtttaagaaagcaatgtgaatccataatatgctatatc 43539035  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 43539143 - 43539189
Alignment:
Q  145 gtcactttagtccccgactcaagataaactacaaaatagtccctgaa 191  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  43539143 gtcactttagtccccgactcaggataaactacaaaatagtccctgaa 43539189  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 59590 - 59636
Alignment:
Q  145 gtcactttagtccccgactcaagataaactacaaaatagtccctgaa 191  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||    
T  59590 gtcactttagtccctgactcaggataaactacaaaatagtccctgaa 59636  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 10233935 - 10233977
Alignment:
Q  192 agttgacagtaacccttgtcctgaacaactccaataacatcta 234  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  10233935 agttgacagtaacccatgtcctgaacaactccaatgacatcta 10233977  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 43539885 - 43539839
Alignment:
Q  145 gtcactttagtccccgactcaagataaactacaaaatagtccctgaa 191  Q
    |||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  43539885 gtcattttagtcccctactcaggataaactacaaaatagtccttgaa 43539839  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 29980333 - 29980287
Alignment:
Q  145 gtcactttagtccccgactcaagataaactacaaaatagtccctgaa 191  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  29980333 gtcactttagtccccaactcaagataaactacaaaatagtccctgaa 29980287  T

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Target: scaffold0419 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 12500 - 12444
Alignment:
Q  7 ataacaccaaaacacgccaataatgtttaagaaagcaatgtgaatccataatatgct 63  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  12500 ataacatcaaaacatgtcaataatgtttaagaaagcaatgtgaatccatactatgct 12444  T

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Target: scaffold0277 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 8842 - 8898
Alignment:
Q  7 ataacaccaaaacacgccaataatgtttaagaaagcaatgtgaatccataatatgct 63  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  8842 ataacatcaaaacatgtcaataatgtttaagaaagcaatgtgaatccatactatgct 8898  T

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Target: scaffold0277; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 17599 - 17648
Alignment:
Q  14 caaaacacgccaataatgtttaagaaagcaatgtgaatccataatatgct 63  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  17599 caaaacatgtcaataatgtttaagaaagcaatgtgaatccatactatgct 17648  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 28777451 - 28777400
Alignment:
Q  7 ataacaccaaaacacgccaataatgtttaagaaagcaatgtgaatccataat 58  Q
    |||||| ||||||| | ||||||||||||||||||||||||||| |||||||    
T  28777451 ataacatcaaaacatgtcaataatgtttaagaaagcaatgtgaaaccataat 28777400  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 28799155 - 28799112
Alignment:
Q  7 ataacaccaaaacacgccaataatgtttaagaaagcaatgtgaa 50  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  28799155 ataacatcaaaacatgtcaataatgtttaagaaagcaatgtgaa 28799112  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 8336819 - 8336861
Alignment:
Q  192 agttgacagtaacccttgtcctgaacaactccaataacatcta 234  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  8336819 agttgacagtaacccatgtcctgaacaactccaatgacatcta 8336861  T

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