View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_68 (Length: 255)
Name: NF1281_low_68
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40021475 - 40021383
Alignment:
| Q |
1 |
tgctcttttacattgactttgaagatatttgtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaaatttca |
93 |
Q |
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| T |
40021475 |
tgctcttttacattggttttgaagatatatgtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaaatttca |
40021383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 40021367 - 40021260
Alignment:
| Q |
141 |
tcatcatataatatcaaattgcagtgaaaataagtctcagcaacataaa-tcatttgtcatatcttaaaaattgaattaaatatgtcaaattaaaaatat |
239 |
Q |
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| T |
40021367 |
tcatcatataatatcaaattgtagtgaaaataagtctgagcaacataaagtcatttgtcatatcttaaaaattgaactaaacatgtcaaattaaaaatat |
40021268 |
T |
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| Q |
240 |
ttcatctc |
247 |
Q |
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| T |
40021267 |
tttatctc |
40021260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 27505050 - 27505092
Alignment:
| Q |
67 |
taattcaacaattaataagaaatttcaagatgttactcttcaac |
110 |
Q |
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| T |
27505050 |
taattcaacaattaa-aagaaatatcaagatgttactcttcaac |
27505092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 22401802 - 22401760
Alignment:
| Q |
205 |
taaaaattgaattaaatatgtcaaattaaaaatatttcatctc |
247 |
Q |
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| T |
22401802 |
taaaaattgaatcaaacatgtcaaattaaaaatatttcctctc |
22401760 |
T |
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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 11262005 - 11262088
Alignment:
| Q |
31 |
gtaacaccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaa-atttcaagatgttactcttcaacatt |
113 |
Q |
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| T |
11262005 |
gtaacaccctaaaccctgcatactatttttaaataataattcaacaattaataagaacatttcaggttgttactcttcaacatt |
11262088 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 15002953 - 15002919
Alignment:
| Q |
206 |
aaaaattgaattaaatatgtcaaattaaaaatatt |
240 |
Q |
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| T |
15002953 |
aaaaattgaatcaaatatgtcaaattaaaaatatt |
15002919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 27357888 - 27357846
Alignment:
| Q |
205 |
taaaaattgaattaaatatgtcaaattaaaaatatttcatctc |
247 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| |||| |
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| T |
27357888 |
taaaaattgaatcaaacatgtcaaattaaaaatatttcctctc |
27357846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 32541083 - 32541042
Alignment:
| Q |
204 |
ttaaaaattgaattaaatatgtcaaattaaaaatatttcatc |
245 |
Q |
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| T |
32541083 |
ttaaaaattgaaccaaacatgtcaaattaaaaatatttcatc |
32541042 |
T |
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