View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_76 (Length: 216)
Name: NF1281_low_76
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 53498866 - 53499007
Alignment:
| Q |
1 |
cagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatcct |
100 |
Q |
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| T |
53498866 |
cagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatcct |
53498965 |
T |
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| Q |
101 |
tagagggacgcctttcatttcccattcagaatacttcttttc |
142 |
Q |
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| T |
53498966 |
tagagggacgcctttcatttcccattcagaatacttcttttc |
53499007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 53491274 - 53491413
Alignment:
| Q |
5 |
gtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatcctta |
102 |
Q |
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| T |
53491274 |
gtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaacatagataacctgcttatttactaaatcctttggcccaatttcaatcctta |
53491373 |
T |
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| Q |
103 |
gagggacgcctttcatttcccattcagaatacttcttttc |
142 |
Q |
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| T |
53491374 |
gagggacacctttcaattcccaatcagaatacttcctttc |
53491413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 16069999 - 16070087
Alignment:
| Q |
48 |
acaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatactt |
136 |
Q |
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| T |
16069999 |
acaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagggacacctttcatttcccattcagaatactt |
16070087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
93 |
tcaatccttagagggacgcctttcatttcccattcagaa |
131 |
Q |
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| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 45355440 - 45355367
Alignment:
| Q |
60 |
acctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaata |
133 |
Q |
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| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaata |
45355367 |
T |
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