View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_8 (Length: 614)
Name: NF1281_low_8
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 238 - 583
Target Start/End: Original strand, 21557991 - 21558332
Alignment:
| Q |
238 |
tggtgatatattaacaagaattgatagatatatatattacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaa |
337 |
Q |
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| T |
21557991 |
tggtgatatattaacaagaattgatagatat----attacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaacagacctcgccggaaa |
21558086 |
T |
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| Q |
338 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaagagcgggtgttattagcagcaagacactcttccatgctaacaccatagttggctaat |
437 |
Q |
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| T |
21558087 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaggagcgagtattattagcagcaagacactcttccatgctaacaccatagttggctaat |
21558186 |
T |
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| Q |
438 |
ggaggaaggagttgaaaaagagtattgaagtcattgctaggaagatcagagaagaaagcagaaaattcaggtgggtttaaccctaatgcttcatagcgtt |
537 |
Q |
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| T |
21558187 |
ggaggaaggagttgaaaaagagtattgaagtcattgctaggaagatcagagaagaaagcagaaaattcaggtgggttgaaccctaatgcttcatagcgtt |
21558286 |
T |
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| Q |
538 |
tgatgatgtgtttgatgattacatcaacaacattgattgtgttact |
583 |
Q |
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| T |
21558287 |
tgatgatgtgtttgatgattacatcaacaacattgattgtgttact |
21558332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 21557766 - 21557917
Alignment:
| Q |
13 |
aatatcttatgtaaaaatagggtaagttttatggtttagggtttcatacaatacatcaaaatagtgaaactccttttaggaccctactaattgttggttt |
112 |
Q |
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| T |
21557766 |
aatatcttatgtaaaaatagggtaagttttagggtttatggtttcgtacaatacaccaaaatggtgaaactccttttaggaccctattaattgttggttt |
21557865 |
T |
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| Q |
113 |
cgctatgtgacgctatcatttatgataagttgtgtgctaatatacttttcct |
164 |
Q |
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| T |
21557866 |
cgctatgtgacgctatcatttatgataagttgtgtgctaatatacttttcct |
21557917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 274 - 561
Target Start/End: Original strand, 20855189 - 20855473
Alignment:
| Q |
274 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccggtagaaagatccggggacaccagccgc |
373 |
Q |
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| T |
20855189 |
ttaccttagataaccaatgcaaacaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccggtaaaacgaaccgggaactccggcaac |
20855288 |
T |
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| Q |
374 |
gaagtaagagcgggtgttattagcagcaagacactcttccatgctaacaccatagttggctaatggaggaaggagttgaaaaagagtattgaagtcattg |
473 |
Q |
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| T |
20855289 |
aaagtaggacctttggttatcagcagctaaacactcttccatgctaataccat---tggcaagtggaggaaggagctgaaagagagtgttgaagtcattg |
20855385 |
T |
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| Q |
474 |
ctaggaagatcagagaagaaagcagaaaattcaggtgggtttaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacat |
561 |
Q |
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| T |
20855386 |
ctaggaagatcagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttaatgatgtgatttatgatcacat |
20855473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 274 - 514
Target Start/End: Original strand, 41002849 - 41003086
Alignment:
| Q |
274 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccggtagaaagatccggggacaccagccgc |
373 |
Q |
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| T |
41002849 |
ttaccttagataaccaatgcaaagaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccgataaaacgaaccgggaactccggcaac |
41002948 |
T |
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| Q |
374 |
gaagtaagagcgggtgttattagcagcaagacactcttccatgctaacaccatagttggctaatggaggaaggagttgaaaaagagtattgaagtcattg |
473 |
Q |
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| T |
41002949 |
aaagtaggacctttggttatcagcagctaaacactcttccatgctaacaccat---tggcaagtggaggaaggagctgaaagagagtgttgaagtcattg |
41003045 |
T |
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| Q |
474 |
ctaggaagatcagagaagaaagcagaaaattcaggtgggtt |
514 |
Q |
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| T |
41003046 |
ctaggaagatcagagaaataggctgaaaattcaggtgggtt |
41003086 |
T |
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