View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_83 (Length: 207)
Name: NF1281_low_83
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 931382 - 931521
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
931382 |
aaataactcatttttcaaacagtatatgagatctttggaagcatcagctgcggcaattggaaagaaagagtggggaacaagtggacccatgaaggaacat |
931481 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
931482 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
931521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 10607909 - 10607770
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10607909 |
aaataactcatttttcaaacagtatatgagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggatccatgaaggaacat |
10607810 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10607809 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
10607770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 12589793 - 12589654
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12589793 |
aaataactcatttttcaaacagtatatgagatctttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
12589694 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
12589693 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
12589654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 46764710 - 46764849
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46764710 |
aaataactcatttttcaaacagtatatgagatctttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
46764809 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
46764810 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
46764849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 25655229 - 25655091
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25655229 |
aaataactcatttttcaaacagtatatgagatctttggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaac-t |
25655131 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
25655130 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
25655091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 11680803 - 11680941
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11680803 |
aaataactcatttttcaa-cagtatatgagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtagacccatgaaggaacat |
11680901 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |
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| T |
11680902 |
ggaacatggaatacaaatgaacaaatcaaatagtataatc |
11680941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 11689082 - 11689220
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggacccatgaaggaacat |
118 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11689082 |
aaataactcatttttcaa-cagtatatgagatctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtagacccatgaaggaacat |
11689180 |
T |
|
| Q |
119 |
ggaacatggaatacaaatgaacaaatccagtagtataatc |
158 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
11689181 |
ggaacatggaatacaaatgaacaaatcaaatagtataatc |
11689220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 4371220 - 4371130
Alignment:
| Q |
21 |
aaataactcatttttcaaacagtat--gagatctt---tggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccc |
106 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4371220 |
aaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaggtggaccc |
4371130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 4363380 - 4363327
Alignment:
| Q |
53 |
ttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccc |
106 |
Q |
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||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
4363380 |
ttggaagcaacagcaggagcaattgggaagaaagagtggggaacaagtggaccc |
4363327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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