View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_low_84 (Length: 205)
Name: NF1281_low_84
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 40446846 - 40447041
Alignment:
| Q |
1 |
ttgttcaagctaaagccataccatgtattccctttctctctcacgttgggtcagttagttgggtgacttacacattgaaatcagtttcttccaccaatat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40446846 |
ttgtccaagctaaagccataccatgtattccctttctctcacacgttggatcaattagttgggtgagttacacattgaaatcagtttcttccaccaatat |
40446945 |
T |
|
| Q |
101 |
aattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcatattctt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
40446946 |
aattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattgttccctctcacagtattctcttattacttcctattctt |
40447041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 337473 - 337668
Alignment:
| Q |
1 |
ttgttcaagctaaagccataccatgtattccctttctctctcacgttgggtcagttagttgggtgacttacacattgaaatcagtttcttccaccaatat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
337473 |
ttgtccaagctaaagccataccatgtattccctttctctcacacgttggatcaattagttgggtgagttacacattgaaatcagtttcttccaccaatat |
337572 |
T |
|
| Q |
101 |
aattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcatattctt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||| |
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| T |
337573 |
aattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattattccctctcacagtattctcttattacttcctattctt |
337668 |
T |
|
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Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 68712 - 68907
Alignment:
| Q |
1 |
ttgttcaagctaaagccataccatgtattccctttctctctcacgttgggtcagttagttgggtgacttacacattgaaatcagtttcttccaccaatat |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
68712 |
ttgtccaagctaaagccataccatgtattccctttctctcacacgttggattaattagttgggtgagttacacattgaaatcagtttcttccaccaatat |
68811 |
T |
|
| Q |
101 |
aattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcatattctt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
68812 |
aattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgttccctctcgcaatattctcttattacttcctattctt |
68907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22077067 - 22077263
Alignment:
| Q |
1 |
ttgttcaagctaaagccataccatgtatt-ccctttctctctcacgttgggtcagttagttgggtgacttacacattgaaatcagtttcttccaccaata |
99 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22077067 |
ttgtccaagctaaagccataccatgtatttccctttctctcacacgttggattaattagttgggtgagttacacattgaaatcagtttcttccaccaata |
22077166 |
T |
|
| Q |
100 |
taattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcatattctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
22077167 |
taattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgttccctctcacaatattctcttattacttcctattctt |
22077263 |
T |
|
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