View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1282-Insertion-2 (Length: 274)
Name: NF1282-Insertion-2
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 8941785 - 8941684
Alignment:
| Q |
121 |
atattaatatacactctaccaatagctctcacatattagaatcagaatatctttagatttgcatgagttaaatacactacatataaagattattagaaga |
220 |
Q |
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| T |
8941785 |
atattactatacactctaccactagctgtcgcatattagaatcagaatatctttagatttgcatgagttaagtacactacacataaagattattagaaga |
8941686 |
T |
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| Q |
221 |
ag |
222 |
Q |
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|| |
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| T |
8941685 |
ag |
8941684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 8942786 - 8942701
Alignment:
| Q |
7 |
ataatgaacattttagaatgtagtatttagaatatata----cctctcacgtcaataaataggcaaacgtatgtgtatgcattcaa |
88 |
Q |
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| T |
8942786 |
ataatgaacattttagaatgtagtatttagaatatatatatacctcccacgtcaataaataggcaaacatatgtgtatgcattcaa |
8942701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 8941545 - 8941480
Alignment:
| Q |
209 |
attattagaagaagaaggagcgagaaaaacttatctcatggagacatcctcttcatcttgatttga |
274 |
Q |
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| T |
8941545 |
attattagaagaagaaggagcgagaaaaatttatctcatgaatacatcctcttcatcttgatttga |
8941480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 24853408 - 24853444
Alignment:
| Q |
89 |
tgtattcaagtctttaagatgtaatgtcaataatatt |
125 |
Q |
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| T |
24853408 |
tgtattcaagcctttaagatgcaatgtcaataatatt |
24853444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 28788022 - 28788058
Alignment:
| Q |
89 |
tgtattcaagtctttaagatgtaatgtcaataatatt |
125 |
Q |
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| T |
28788022 |
tgtattcaagcctttaagatgcaatgtcaataatatt |
28788058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 1205973 - 1205941
Alignment:
| Q |
10 |
atgaacattttagaatgtagtatttagaatata |
42 |
Q |
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| T |
1205973 |
atgaacattctagaatgtagtatttagaatata |
1205941 |
T |
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