View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_high_1 (Length: 1175)
Name: NF12820_high_1
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 388 - 792
Target Start/End: Complemental strand, 3111799 - 3111395
Alignment:
| Q |
388 |
aggaaaaggagttagaaatgcctcgtgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtga |
487 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111799 |
aggaaaaggagttagaaattcctcttgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtga |
3111700 |
T |
|
| Q |
488 |
caagaaaagtgaatttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattg |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111699 |
caagaaaagtgaatttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattg |
3111600 |
T |
|
| Q |
588 |
gcaactgaattgatgagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtga |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111599 |
gcaactgaattgatgagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtga |
3111500 |
T |
|
| Q |
688 |
ttgatgataaagtggatcatagcttcaaaacttcaatgaatgctgatcttgtcattgctggatcggctgtttgtgcttcatggattggtatgaagaaatt |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3111499 |
ttgatgataaagtggatcatagcttcaaaacttcaatgaatgctgatcttgtcattgctggatcggctgtttgtgcttcatggattggtatgaagaaatt |
3111400 |
T |
|
| Q |
788 |
tctaa |
792 |
Q |
| |
|
||||| |
|
|
| T |
3111399 |
tctaa |
3111395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 299 - 793
Target Start/End: Original strand, 26269222 - 26269716
Alignment:
| Q |
299 |
gaaaaggaagggtagaaggtttttgagaagtaaggtacatggtaagcataaaagaagattgaaagttgatggaaattttggtaatatagaggaaaaggag |
398 |
Q |
| |
|
|||||||| | ||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26269222 |
gaaaaggaggagtagaagatcattgagaagtaagttacatggtaagcataaaagaaaattgaaagttgatggaaattttggtaatatagaggaaaaggag |
26269321 |
T |
|
| Q |
399 |
ttagaaatgcctcgtgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtg |
498 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26269322 |
ttagaaattcctcttgttggtccatttggttcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtg |
26269421 |
T |
|
| Q |
499 |
aatttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaatt |
598 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
26269422 |
aatttgcacaagttgttatgtcaaagagttttgtattgatatttcatgagctttctatgactggagcaccactttcaatgatggagttggcaactgaact |
26269521 |
T |
|
| Q |
599 |
gatgagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtgattgatgataaa |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |
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|
| T |
26269522 |
tttgagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagagcttgttaggagacaaattaaggtgattgatgataaa |
26269621 |
T |
|
| Q |
699 |
gtggatcatagcttcaaaacttcaatgaatgctgatcttgtcattgctggatcggctgtttgtgcttcatggattggtatgaagaaatttctaaa |
793 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
26269622 |
gtggatcatagcttcaaaacttcaatgaacgctcatcttgtcattgctggatcagctgtttgtgcttcatggattggtatgaacaaatttgtaaa |
26269716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 3112131 - 3111798
Alignment:
| Q |
11 |
aagcaaaggtagtagtaatgcatcgttttcttggattggaagcaaccggttagttttgtgtctgattttggttactctttgggcttatcttgggtttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3112131 |
aagcaaaggtagtagtaatgcatcgttttcttggattggaagcaaccggttagttttgtgtctgattttggttactctttgggcttatcttgggtttttt |
3112032 |
T |
|
| Q |
111 |
gttcaatctaagtgggatcaatatgagaaagaacaagaattaaaagggtttgattttcatcttaaaaatcatcaagattcagttgtgnnnnnnngttctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3112031 |
gttcaatctaagtgggatcaatatgagaaagaacaagaattaaaagggtttgattttcatcttaaaaatcatcaagattcagttgtgcaaaaaagttctt |
3111932 |
T |
|
| Q |
211 |
tatttgttgataatgaaaaagttggtgtgaataatctcgtagatgttgtattggccaagaaaagagaaaatggtaatatcagttcaaggaaaaggaaggg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3111931 |
tatttgttgataatgaaaaagttggtgtgaataatctcgtagatgttgtattggccaagaaaagagaaaatggtaatatcagttcaaggaaaaggaagag |
3111832 |
T |
|
| Q |
311 |
tagaaggtttttgagaagtaaggtacatggtaag |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3111831 |
tagaaggtttttgagaagtaaggtacatggtaag |
3111798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 861 - 1159
Target Start/End: Complemental strand, 3111326 - 3111028
Alignment:
| Q |
861 |
aattaattaatttgtgtaaataagtacttttctacagaagttcttattagaacaacatttttcttgtatgtttacagaacaatacattgaatactttcct |
960 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3111326 |
aattaattaatttgtgtaaataagtacttttctacagaagttcttattagaacaacatttttcttgtatgtttacagaacaatacattgaatactttcct |
3111227 |
T |
|
| Q |
961 |
gctgctgcaaatcaagttgtttggtggattatggaaaaccgaagagagtacttcaatcgttcaaaggacgtcttgaacaaagtgaagatgttggtttttc |
1060 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3111226 |
gctgctgcaaatcaagttgtttggtggattatggaaaacagaagagagtacttcgatcgttcaaaggacgtcttgaacaaagtgaagatgttggtttttc |
3111127 |
T |
|
| Q |
1061 |
tttccgaatcacaatctaagaaatggcaaaaatggtgtgaagaagaaagcataacgcttagattccagcctgtacatgttccattgtctgttaatgatg |
1159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3111126 |
tttccgaatcacaatctaagaaatggcaaaaatggtgtgaagaagaaagcataacgcttagattccagcctgtacatgttccattgtctgttaatgatg |
3111028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 873 - 1158
Target Start/End: Original strand, 26270040 - 26270323
Alignment:
| Q |
873 |
tgtgtaaataagtacttttctacagaagttcttattagaacaacatttttcttgtatgtttacagaacaatacattgaatactttcctgctgctgcaaat |
972 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
26270040 |
tgtgtaaataagtacttttctacaaaagttcttattagaacaacatttt-cttgtac-tttacagaacagtacattgaatactctcctgctgctgcaaat |
26270137 |
T |
|
| Q |
973 |
caagttgtttggtggattatggaaaaccgaagagagtacttcaatcgttcaaaggacgtcttgaacaaagtgaagatgttggtttttctttccgaatcac |
1072 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
26270138 |
catgttgtttggtggattatggaaaacagaagagagtactttgatcgttcaaaagacgttttgaacaaagtgaggatgttgatttttctttccgaattgc |
26270237 |
T |
|
| Q |
1073 |
aatctaagaaatggcaaaaatggtgtgaagaagaaagcataacgcttagattccagcctgtacatgttccattgtctgttaatgat |
1158 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
26270238 |
aatctaagaaatggcaaaagtggtgtgatgaagaaagcataaagcttagattgcagcctgcacatgttccattgtctgttaatgat |
26270323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 26268964 - 26269227
Alignment:
| Q |
11 |
aagcaaaggtagtagtaatgcatcgttttcttggattggaagcaaccggttagttttgtgtctgattttggttactctttgggcttatcttgggtttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
26268964 |
aagcaaaggtagtagtaatgcatcgttttcttggattggaagcaaccgattagtattgtggctggttttggttaccctttgggcttatcttggttttttt |
26269063 |
T |
|
| Q |
111 |
gttcaatctaagtgggatcaatatgagaaagaacaagaattaaaagggtttgattttcatcttaaaaatcatcaagattcagttgtgnnnnnnngttctt |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
26269064 |
gttcaatctaagtgggatcattatgagaaagaacaagaactaaaagggtttgattttcatcttaaaaatcatcaagattcggttgtcaaaaaaagttctt |
26269163 |
T |
|
| Q |
211 |
tatttgttgataatgaaaaagttggtgtgaataatctcgtagatgttgtattggccaagaaaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
26269164 |
tatttgttgataatgaaaaagttggtgtgaataatctcctggatattgtattggccaagaaaag |
26269227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 935 - 1159
Target Start/End: Original strand, 44062660 - 44062884
Alignment:
| Q |
935 |
cagaacaatacattgaatactttcctgctgctgcaaatcaagttgtttggtggattatggaaaaccgaagagagtacttcaatcgttcaaaggacgtctt |
1034 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||||||| | |||||||||| ||||| |
|
|
| T |
44062660 |
cagaacaatatattgaacgttttcctgctggtgcgagccaagttgcttggtgggtcatggaaaaccgtagagagtactttgaccgttcaaagggtgtctt |
44062759 |
T |
|
| Q |
1035 |
gaacaaagtgaagatgttggtttttctttccgaatcacaatctaagaaatggcaaaaatggtgtgaagaagaaagcataacgcttagattccagcctgta |
1134 |
Q |
| |
|
| ||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| | |||| ||| |||| | |
|
|
| T |
44062760 |
gcacagagtaaagatgttggtttttctttcggaatcacaatctaaacaatggcaaaaatggtgtgaagaagaaaacataaaattgagataccaacctgca |
44062859 |
T |
|
| Q |
1135 |
catgttccattgtctgttaatgatg |
1159 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
44062860 |
attgttcctttgtctgttaatgatg |
44062884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 534 - 781
Target Start/End: Original strand, 44061562 - 44061809
Alignment:
| Q |
534 |
ttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaattgatgagttgtggagcaaatgtttcagctgttgttc |
633 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| ||||| |||||| ||||||||||||| || | |||| ||||| || | | |||| ||||||| | |
|
|
| T |
44061562 |
ttgatattccacgagctttccatgaccggagctccactctcaatgttggaattggcaacagagcttttgagctgtggtgccactatttcggctgttgcac |
44061661 |
T |
|
| Q |
634 |
ttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtgattgatgataaagtggatcatagcttcaaaacttcaatgaatgctga |
733 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || ||| || |||||| |||| || |||| ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
44061662 |
ttagcaggaaaggtggtttgatgtcagagctttctagaagacggatcaaggtgcttgaggacaaagcagatcaaagcttcaaaactgcaatgaaggctga |
44061761 |
T |
|
| Q |
734 |
tcttgtcattgctggatcggctgtttgtgcttcatggattggtatgaa |
781 |
Q |
| |
|
|||||| |||||||| || ||||| ||||| ||||||||||||||||| |
|
|
| T |
44061762 |
tcttgtaattgctggttcagctgtatgtgcatcatggattggtatgaa |
44061809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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