View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_high_10 (Length: 538)
Name: NF12820_high_10
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 28048001 - 28047526
Alignment:
| Q |
19 |
ctcaggtggttggagccgttgcatttcagaataaaagaacttctatccctccaaacgtctccccagtattggcctcccttatggaatcttgttgggccga |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
28048001 |
ctcaggtggttggagccgtcgcatttcagaataggagaccttctatccctccaaacgtctccccagtattggcctcccttatggaatcctgttgggctga |
28047902 |
T |
|
| Q |
119 |
gtaagtggtttcttgctttattttcaggcagttttcaata------cacatggtcagtttgtccaaatttttatggaatgccttttttaatccttgcgac |
212 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
28047901 |
gtaagtgtttacttgctttatttttaggcagttttcaatatgctcacacatcgtcaatttgtccaaatttttatggaaagccttttgtaatccttgcgaa |
28047802 |
T |
|
| Q |
213 |
gtgtatatattctaaggtaggatagactttctaataaattaggaattcttgatgaaactttgcgtagttttgatacat-taatgtttgattgggtttaat |
311 |
Q |
| |
|
|| |||||||||||| ||||||||| |||| |||||| ||| ||||||| |||||| ||||||||||||| |||| || ||||||||| ||||| ||| |
|
|
| T |
28047801 |
gtttatatattctaatgtaggatagcctttataataacttacgaattctggatgaagctttgcgtagtttagataaatgtaatgtttggttgggcataag |
28047702 |
T |
|
| Q |
312 |
tttggctttgcacttctttgtattgctattagtaggttgatcagatggattccattttgggattactgaatactgaattaacaacaataaaaccaaacac |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||| | || |
|
|
| T |
28047701 |
tttggttttgcacttctttgtattgctattagtaggtaaatcagatggattccattttgggattactgaatattgaattcgcaataataataccagaaac |
28047602 |
T |
|
| Q |
412 |
agaatttgttgtgactgataaatcattgattttagttgttacttttggatcttaccaacttcagattctataagga |
487 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28047601 |
agaatttgatgtgactgatgaatcattgattttagttgttacttttggatcttaccaacttcagattctataagga |
28047526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 45980134 - 45980239
Alignment:
| Q |
19 |
ctcaggtggttggagccgttgcatttcagaataaaagaactt-ctatccctccaaacgtctccccagtattggcctcccttatggaatcttgttgggccg |
117 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||| | | ||| |||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
45980134 |
ctcaggtggttggagctgttgctttccagaatagga-agcttgctatcccttcaaacatctccccagtattgtcctccctcatggaatcttgttgggctg |
45980232 |
T |
|
| Q |
118 |
agtaagt |
124 |
Q |
| |
|
||||||| |
|
|
| T |
45980233 |
agtaagt |
45980239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University