View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_high_12 (Length: 524)
Name: NF12820_high_12
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_12 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 46 - 524
Target Start/End: Original strand, 37862587 - 37863065
Alignment:
| Q |
46 |
ttgggggaaaatagaatttgttgacttagtaagatgcgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaacc |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862587 |
ttgggggaaaatagaatttgttgacttagtaagatgtgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaacc |
37862686 |
T |
|
| Q |
146 |
gaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcactt |
245 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862687 |
gaaaagcacaccccattcgagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcactt |
37862786 |
T |
|
| Q |
246 |
gacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaattgctggtccac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37862787 |
gacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagttcaacttggtcaagaattgctggtccac |
37862886 |
T |
|
| Q |
346 |
ctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggccagg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862887 |
ctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggccagg |
37862986 |
T |
|
| Q |
446 |
aacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgatt |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37862987 |
aacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgatt |
37863065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 106 - 519
Target Start/End: Original strand, 37858621 - 37859034
Alignment:
| Q |
106 |
ggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgattt |
205 |
Q |
| |
|
||||||| |||||||| | ||||||||||| || ||||| || || ||||||||||| || |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
37858621 |
ggagcactacagtctcaacagtgagtccgggcccgaaaccaaataggacaccccattccagcccctcgcctgttgtggcaagtccgtcttcttttgactt |
37858720 |
T |
|
| Q |
206 |
catcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaag |
305 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37858721 |
cctcctcatctcatccaagatgaataacacacatgcacttgacatgttaccatactcgctaagcacatgtcgagtggcttgcattttctctggctttaag |
37858820 |
T |
|
| Q |
306 |
cctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcct |
405 |
Q |
| |
|
| ||||||| | | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||| ||||| |||| |
|
|
| T |
37858821 |
cttaatttggcttccacttggtccagaattgctggtccaccagggtgtgcgatccaaaagatggaattgtaatcagagatacctaaaggttgaaaggcct |
37858920 |
T |
|
| Q |
406 |
caacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctcc |
505 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || || |||| ||||||||||| ||||| ||||| |
|
|
| T |
37858921 |
cagcaagagctttctcaatgttctttgagataagaccaggaacatccttgaggagatggaatgtaagcccgacttcacgaaggtgaccgtcaattgctcc |
37859020 |
T |
|
| Q |
506 |
ttcactatctggaa |
519 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37859021 |
ttcactatctggaa |
37859034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 54 - 519
Target Start/End: Complemental strand, 39030988 - 39030523
Alignment:
| Q |
54 |
aaatagaatttgttgacttagtaagatgcgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagca |
153 |
Q |
| |
|
|||||||| |||||| ||| |||| ||| |||||||||||||| ||||||| |||||||||||||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
39030988 |
aaatagaacttgttgccttggtaaaatgtgaggatttaggtggccacactatggagcacaacagtctcgacagtgagtccaggtccaaaacttaaaagca |
39030889 |
T |
|
| Q |
154 |
caccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
253 |
Q |
| |
|
| |||||||||||||| || || |||||| ||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||| | | |||||||||||| |
|
|
| T |
39030888 |
cgccccattcaagtccttctcctgttgtgccaagtccttcttcttttgacttcctcctcatctcatccaaaatgaataacacggatggacttgacatgtt |
39030789 |
T |
|
| Q |
254 |
accatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgc |
353 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||| |
|
|
| T |
39030788 |
accatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgtccgcctgggtgt |
39030689 |
T |
|
| Q |
354 |
gcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatcct |
453 |
Q |
| |
|
|| |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
39030688 |
gcaatccaaaaaattgaattgtaatcggagatattcaaaggttgaaaggcctcaacaagagttttctcaatgttctttgagatgaggtcaggaacatctt |
39030589 |
T |
|
| Q |
454 |
tgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaa |
519 |
Q |
| |
|
||| || ||| ||||| ||||||||||||| | |||| | | ||||||||||||||||||||||| |
|
|
| T |
39030588 |
tgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaa |
39030523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 37862526 - 37862570
Alignment:
| Q |
6 |
gaggagcagagatacaaagaaagaaagaatacatttgattttggg |
50 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37862526 |
gaggaacagaaatacaaagaaagaaagaatacatttgattttggg |
37862570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 40421178 - 40421227
Alignment:
| Q |
210 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccata |
259 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||||||||||| ||||| |
|
|
| T |
40421178 |
ctcatctcatccaatataaatatcacacaagcacttgacatgtttccata |
40421227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 201 - 518
Target Start/End: Complemental strand, 1478769 - 1478452
Alignment:
| Q |
201 |
gatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggct |
300 |
Q |
| |
|
|||||| | |||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||| | | |||||| | |||||| || || | |
|
|
| T |
1478769 |
gatttctttctcatctcatccaagatgaacaatacacatgcgcttgacatgttaccatattcactaagtacttccctagtggccttcattttttcaggtt |
1478670 |
T |
|
| Q |
301 |
ttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaa |
400 |
Q |
| |
|
|||||||||| || | |||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||| ||||| ||||| || || || || || |
|
|
| T |
1478669 |
ttaagcctaacttttcttcaacttggtctagaattgcgggtccacctgggtgagcaatccagaagattgaattataatcagagatgtttaatggttggaa |
1478570 |
T |
|
| Q |
401 |
tgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaata |
500 |
Q |
| |
|
||||| || | ||||| |||||||||||||| |||| ||||||||||| || || || || ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
1478569 |
agcctcgaccaatgctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaaggtgaccatcaatg |
1478470 |
T |
|
| Q |
501 |
gctccttcactatctgga |
518 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
1478469 |
gctccctcactgtctgga |
1478452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 212 - 518
Target Start/End: Complemental strand, 1482952 - 1482646
Alignment:
| Q |
212 |
catctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaat |
311 |
Q |
| |
|
||||||||| ||||| || | ||||| ||||||||||||||||||||||| |||||||| | || |||||||| ||| || || || ||||||||||| |
|
|
| T |
1482952 |
catctcatctaagataaacaatacacatgcacttgacatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaac |
1482853 |
T |
|
| Q |
312 |
ttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaa |
411 |
Q |
| |
|
|| || ||||||| ||||||||||| ||||||||||| || || ||||||||||| || |||||||| || || || || || || || || || | | |
|
|
| T |
1482852 |
ttttgttcaacttgatcaagaattgcgggtccacctggatgagcaatccaaaagattgagttgtaatcagaaatgtttaatggttggaaagcatcgatca |
1482753 |
T |
|
| Q |
412 |
gagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcact |
511 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| || || || || ||||| || || ||||| ||||| ||||| ||||| || || ||||| |
|
|
| T |
1482752 |
atgctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaagatgaccgtcaatggccccctcact |
1482653 |
T |
|
| Q |
512 |
atctgga |
518 |
Q |
| |
|
|||||| |
|
|
| T |
1482652 |
gtctgga |
1482646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 514
Target Start/End: Complemental strand, 1492940 - 1492625
Alignment:
| Q |
199 |
ttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctgg |
298 |
Q |
| |
|
|||||||| | ||||| ||||||||||| || | ||||| ||||||||||| || |||||||| || || || | || |||||| ||| || || || |
|
|
| T |
1492940 |
ttgatttctttctcatttcatccaagataaacaatacacatgcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcggg |
1492841 |
T |
|
| Q |
299 |
ctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctga |
398 |
Q |
| |
|
||||||| |||| || | | |||||||| | |||||| |||||||| ||||| || ||||||||||| || |||||||| ||||| ||| || || |
|
|
| T |
1492840 |
ctttaaggctaacttttgctctacttggtctaaaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttgg |
1492741 |
T |
|
| Q |
399 |
aatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaa |
498 |
Q |
| |
|
|| |||||||| | ||||| | || || ||||| |||| ||||||||||| || || || || ||||| | || ||||| ||||| |||||||||| |
|
|
| T |
1492740 |
aaagcctcaactaatgctttatttatattttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccagcttcacgaagatgaccatcaa |
1492641 |
T |
|
| Q |
499 |
tagctccttcactatc |
514 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
1492640 |
tggcaccttcactatc |
1492625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 518
Target Start/End: Complemental strand, 1509775 - 1509577
Alignment:
| Q |
319 |
caacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagcttt |
418 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||||| || |||||||| || || |||||||| ||||| || || || ||||||||||||| || |||| |
|
|
| T |
1509775 |
caacttggtcaataattgcggctccatctgggtgagcaatccaaaatattgagttgtaatcagagatgtttaatggttgaaatgcctcaatcagtgctta |
1509676 |
T |
|
| Q |
419 |
ctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctgga |
518 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| || || ||| | ||||| ||||| |||| ||||||||||| ||||| || |||||||||| |||| |
|
|
| T |
1509675 |
atcaatgtt-tttgagacagtcacagagacatctttaagaagacgaaatgttagtccaacttcacgaaggtgaccgtcaatggcaccttcactatttgga |
1509577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 514
Target Start/End: Complemental strand, 1505525 - 1505434
Alignment:
| Q |
423 |
atgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatc |
514 |
Q |
| |
|
||||||||||| |||| |||||||||| || || || || ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
1505525 |
atgttctttgaaacaatttcaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggctccttcgctatc |
1505434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 271
Target Start/End: Complemental strand, 1487540 - 1487370
Alignment:
| Q |
101 |
actacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttctttt |
200 |
Q |
| |
|
|||| |||| |||||||| || || || ||||| || ||||| ||||| | ||| ||||||| |||||| || || || || ||||||| |||| | |
|
|
| T |
1487540 |
actatggagaacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtctcaagtccctcttgagct |
1487441 |
T |
|
| Q |
201 |
gatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtac |
271 |
Q |
| |
|
||| || | ||||| |||||||| || || | ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1487440 |
gatctctttctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcactaagtac |
1487370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 1509884 - 1509816
Alignment:
| Q |
200 |
tgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaag |
268 |
Q |
| |
|
||||||| | |||||||| || |||||||| | ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
1509884 |
tgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatattaccatattcactaag |
1509816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 518
Target Start/End: Original strand, 46706338 - 46706657
Alignment:
| Q |
199 |
ttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctgg |
298 |
Q |
| |
|
|||||||| | ||||| ||||| ||||| || | ||||| ||||||||||| || |||||||| ||||| || | || ||||||| ||| || || || |
|
|
| T |
46706338 |
ttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactaagcacttctctagtggctctcatcttttcagg |
46706437 |
T |
|
| Q |
299 |
ctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctga |
398 |
Q |
| |
|
||| ||| |||| || | | ||||| || | |||||| || ||||| ||||| || ||||||||||| || |||||||| || || ||| || || |
|
|
| T |
46706438 |
cttcaaggctaacttttgctctacttgatctaaaattgcagggccaccagggtgtgcaatccaaaagattgagttgtaatcagaaattcccaatggttgg |
46706537 |
T |
|
| Q |
399 |
aatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaa |
498 |
Q |
| |
|
|| |||||||| | ||||| |||||||||||||| |||| ||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
46706538 |
aaagcctcaactaatgctttatcaatgttctttgaaacaatcccaggaacatcttttagaaggtggaatgttagtccagcttcacgaaggtgaccatcaa |
46706637 |
T |
|
| Q |
499 |
tagctccttcactatctgga |
518 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
46706638 |
tggctccttcactatctgga |
46706657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 153 - 514
Target Start/End: Complemental strand, 5315929 - 5315568
Alignment:
| Q |
153 |
acaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgt |
252 |
Q |
| |
|
||||||||||||||||| || || ||||| | |||||||| |||||||| | ||||| ||||| ||||| || | ||||||||||||||||| | |
|
|
| T |
5315929 |
acaccccattcaagtccttctcccgttgtcttcaatccgtctttagttgatttctttctcatttcatctaagataaacaaaacacacgcacttgacatat |
5315830 |
T |
|
| Q |
253 |
taccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtg |
352 |
Q |
| |
|
| |||||||| || || || | || ||| || | ||| || || ||||||||| |||| || | | ||||| || |||||||| |||||||| || || |
|
|
| T |
5315829 |
ttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccacttgatctagaattgcaggtccaccgggatg |
5315730 |
T |
|
| Q |
353 |
cgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatcc |
452 |
Q |
| |
|
|| ||||||||||| || |||||||| || || ||| |||| || |||||||| | ||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
5315729 |
tgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaatgttctttgaaacaatcccaggaacatct |
5315630 |
T |
|
| Q |
453 |
ttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatc |
514 |
Q |
| |
|
|| || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5315629 |
ttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
5315568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 199 - 514
Target Start/End: Complemental strand, 5311169 - 5310854
Alignment:
| Q |
199 |
ttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctgg |
298 |
Q |
| |
|
|||||||| | ||||| ||||| ||||| || | ||||| ||||||||||| || |||||||| || || || | || ||| || | ||| || || || |
|
|
| T |
5311169 |
ttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcagg |
5311070 |
T |
|
| Q |
299 |
ctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctga |
398 |
Q |
| |
|
||||||| |||| || | | ||||| || |||||||| |||||||| || || || ||||||||||| || |||||||| || || ||| |||| |
|
|
| T |
5311069 |
ctttaaggctaacttttgctctacttgatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcg |
5310970 |
T |
|
| Q |
399 |
aatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaa |
498 |
Q |
| |
|
|| |||||||| | ||||| ||||||||||||||||| ||||||||||| || || || || ||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
5310969 |
aaagcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaa |
5310870 |
T |
|
| Q |
499 |
tagctccttcactatc |
514 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
5310869 |
tggctccttcactatc |
5310854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 514
Target Start/End: Complemental strand, 5284958 - 5284765
Alignment:
| Q |
321 |
acttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttct |
420 |
Q |
| |
|
||||| || |||||||| |||||||| || || || ||||||||||| || |||||||| || || ||| |||| ||| |||||||| | ||||| |
|
|
| T |
5284958 |
acttgatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcaaaagcctcaaccaatgctttag |
5284859 |
T |
|
| Q |
421 |
caatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatc |
514 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5284858 |
taatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
5284765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 514
Target Start/End: Complemental strand, 5303146 - 5302953
Alignment:
| Q |
321 |
acttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttct |
420 |
Q |
| |
|
||||| || |||||||| |||||||| || || || ||||||||||| || |||||||| || || || |||| ||| || ||||| | ||||| |
|
|
| T |
5303146 |
acttgatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccagtggctcaaaagcgtcaaccaatgctttag |
5303047 |
T |
|
| Q |
421 |
caatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatc |
514 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5303046 |
taatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
5302953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 514
Target Start/End: Original strand, 5288946 - 5289362
Alignment:
| Q |
98 |
cacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttct |
197 |
Q |
| |
|
||||||||| | |||||||| || || || ||||| || |||||||| || | ||||||||||||||||| || || ||||| | ||||||| |
|
|
| T |
5288946 |
cacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatccgtctatg |
5289045 |
T |
|
| Q |
198 |
tttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctg |
297 |
Q |
| |
|
|||||||| | ||||| ||||| ||||| || | ||||| ||||||||||| || |||||||| || || || | || ||| || | ||| || || | |
|
|
| T |
5289046 |
gttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcag |
5289145 |
T |
|
| Q |
298 |
gctttaagcctaatttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctg |
397 |
Q |
| |
|
|||||||| |||| || | | ||||| || |||||||| |||||||| || || || ||||||||||| || |||||||| || || ||| |||| |
|
|
| T |
5289146 |
gctttaaggctaacttttgctccacttgatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctc |
5289245 |
T |
|
| Q |
398 |
aaatgcctcaacaagagctttctcaatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatca |
497 |
Q |
| |
|
|| |||||||| | ||||| ||||||||||| |||| ||||||||||| || || || || ||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
5289246 |
gaaagcctcaaccaatgctttagtgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtggccatca |
5289345 |
T |
|
| Q |
498 |
atagctccttcactatc |
514 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5289346 |
atggctccttcactatc |
5289362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 518
Target Start/End: Complemental strand, 44129311 - 44129027
Alignment:
| Q |
234 |
acacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaa |
333 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||| || | || ||||||| ||| || || || |||||| |||| || | ||||||| || |||| |
|
|
| T |
44129311 |
acacaagcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaa |
44129212 |
T |
|
| Q |
334 |
ttgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttga |
433 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||| ||||||||||| || || || || | || |||||||| | |||||| | ||||||||||| |
|
|
| T |
44129211 |
ttgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaaagctttattgatgttctttga |
44129112 |
T |
|
| Q |
434 |
gacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctgga |
518 |
Q |
| |
|
|||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44129111 |
aacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctgga |
44129027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 234 - 518
Target Start/End: Complemental strand, 44133516 - 44133232
Alignment:
| Q |
234 |
acacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaa |
333 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||| || | || ||||||| ||| || || || |||||| |||| || | ||||||| || |||| |
|
|
| T |
44133516 |
acacaggcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaa |
44133417 |
T |
|
| Q |
334 |
ttgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttga |
433 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||| ||||||||||| || || || || | || |||||||| | ||||| | ||||||||||| |
|
|
| T |
44133416 |
ttgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttga |
44133317 |
T |
|
| Q |
434 |
gacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctgga |
518 |
Q |
| |
|
|||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44133316 |
aacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctgga |
44133232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 518
Target Start/End: Complemental strand, 44141938 - 44141654
Alignment:
| Q |
234 |
acacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagtccaacttggtcaagaa |
333 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||| || | || ||||||| ||| || || || |||||| |||| || | ||||||| || |||| |
|
|
| T |
44141938 |
acacaggcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaa |
44141839 |
T |
|
| Q |
334 |
ttgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttga |
433 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||| ||||||||||| || || || || | || |||||||| | ||||| | ||||||||||| |
|
|
| T |
44141838 |
ttgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttga |
44141739 |
T |
|
| Q |
434 |
gacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctgga |
518 |
Q |
| |
|
|||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
44141738 |
aacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggccccttcactatctgga |
44141654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 524
Target Start/End: Complemental strand, 35251363 - 35251265
Alignment:
| Q |
426 |
ttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgatt |
524 |
Q |
| |
|
||||| |||| ||| || || ||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
35251363 |
ttcttcgagataagtccgggtacatccttgagaagatggaatgttagtccaacctcacgaaggtgaccatcaatagctccttgactatcaggaaggatt |
35251265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 367
Target Start/End: Complemental strand, 35251572 - 35251415
Alignment:
| Q |
210 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagccta |
309 |
Q |
| |
|
||||| ||||| || ||||| | |||||| |||||||||||||| ||||| || | |||| ||||||||||| || ||| || ||||| ||||||| |
|
|
| T |
35251572 |
ctcatttcatctaaaatgaacaacacacaagcacttgacatgttcccataactactcaacacatttcgagtggcttccaatttttcaggcttcaagccta |
35251473 |
T |
|
| Q |
310 |
atttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagat |
367 |
Q |
| |
|
| ||| |||||||||||||||| ||||||||||| | ||| || ||||||||||| |
|
|
| T |
35251472 |
acttgtcctcaacttggtcaagaatcgctggtccacccgtgtgagcaatccaaaagat |
35251415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 24163151 - 24163395
Alignment:
| Q |
210 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagccta |
309 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| | | || |||||| ||| || || || || ||| ||| |
|
|
| T |
24163151 |
ctcatctcatctaagatgaataatacacatgcacttgacatgttaccatattcactaagcatttttctagtggcactcatcttttcaggtttcaaggcta |
24163250 |
T |
|
| Q |
310 |
atttgagtccaacttggtcaagaattgctggtccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaac |
409 |
Q |
| |
|
| || ||| || ||| |||||||| |||||||| | ||| || ||||||||||| || |||||||| |||||| || || || |||||||||| |
|
|
| T |
24163251 |
acttttcctcaattttgtctagaattgcgggtccaccagagtgagcaatccaaaagattgagttgtaatcagagatacctaatggttggaatgcctcaaa |
24163350 |
T |
|
| Q |
410 |
aagagctttctcaatgttctttgagacaaggccaggaacatcctt |
454 |
Q |
| |
|
| ||||| ||||| ||||||||||||| | | ||||||||||| |
|
|
| T |
24163351 |
caatgctttatcaatattctttgagacaatgtctggaacatcctt |
24163395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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