View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_14 (Length: 509)
Name: NF12820_high_14
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 46631581 - 46632072
Alignment:
| Q |
1 |
cagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatctaaatcacagaaatgct |
100 |
Q |
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| T |
46631581 |
cagatgtatgcaagatctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatctaaatcacagaaatgct |
46631680 |
T |
|
| Q |
101 |
atggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttgaatttgattgttgaaa |
200 |
Q |
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| T |
46631681 |
atggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttgaatttgattgttgaaa |
46631780 |
T |
|
| Q |
201 |
ttttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacattttgttcaagtgtgttttcaatttgacacataaattttg |
300 |
Q |
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| T |
46631781 |
ttttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacatttagttcaagtgtgttttcaatttgacacataaattttg |
46631880 |
T |
|
| Q |
301 |
taggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaaagtgtgtctgagcatc |
400 |
Q |
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| T |
46631881 |
taggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaaagtgtgtctgagcatc |
46631980 |
T |
|
| Q |
401 |
caacaagctacactactgtttcagaccgacaggacaccaacacttgtgattacatacactcacttctattatcttaaattattaccagtgtg |
492 |
Q |
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| T |
46631981 |
caacaagctacactactgtttcagaccgacacgacaccaacacttgtgattacatacactcacttctattatcttaaattattaccagtgtg |
46632072 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Original strand, 7259179 - 7259219
Alignment:
| Q |
440 |
acacttgtgattacatacactcacttctattatcttaaatt |
480 |
Q |
| |
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| T |
7259179 |
acacttgtgatcacatacaatcacttctattttcttaaatt |
7259219 |
T |
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