View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_high_16 (Length: 472)

Name: NF12820_high_16
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_high_16
NF12820_high_16
[»] chr2 (3 HSPs)
chr2 (89-456)||(11649456-11649812)
chr2 (2-57)||(11621984-11622039)
chr2 (26-75)||(11621957-11622006)
[»] chr4 (1 HSPs)
chr4 (88-154)||(37169869-37169935)
[»] chr1 (1 HSPs)
chr1 (88-140)||(44474862-44474914)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 89 - 456
Target Start/End: Original strand, 11649456 - 11649812
Alignment:
Q  89 aaataaatatattatatataagacaacgagaacgaatataaatggtttgagaaacaccaaatgtgaccaaaagaccaaccnnnnnnnnnnnnnnncatat 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||               |||||    
T  11649456 aaataaatatattatatatacgacaacgagaacgaatataaatggtttgagaaacaccaaatgtgaccaaaagcccaaccaaaaagaaaaaa---catat 11649552  T
Q  189 gcaacactgttagaaaagctaaaagaacaacatctcaaaacacaaaatggaaagccctaatccctcccagtctccaaaaacaaaggataactgatcaaac 288  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  11649553 gcaacactatcagaaaagctaaaagaacaacatctcaaaacacaaaatggaaagccctaatccctcccagtgtccaaaaacaaaagataacggatcaaac 11649652  T
Q  289 cccaccagaaaactagaaaacacctgctaggctgctagaccaccaacaacaacaatactataagaacgaaagnnnnnnnntatccctccctcctggtgac 388  Q
    ||||| |||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||||        |||||||||||| |||||||    
T  11649653 cccactagaaaactagaaaacac--------ctgctagaccaccaacaacaacaatactgtaagaacgaaaggaaaaaaatatccctccctcttggtgac 11649744  T
Q  389 caaaaactaaaggaagaatgaaccaaatccactccatcagaaagatgtgattcatgaaatcaataaac 456  Q
    |||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||||    
T  11649745 caaaaactaaaggaagaatgaaccaaatccactttatgagaaagatgcgattcatgaaatcaataaac 11649812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 11621984 - 11622039
Alignment:
Q  2 gccatatatgtgaaataatttagtagggtctttgattattctttaccattggccat 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11621984 gccatatatgtgaaataatttagtagggtctttgattattctttaccattggccat 11622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 11621957 - 11622006
Alignment:
Q  26 agggtctttgattattctttaccattggccatatatgtgaaataacttag 75  Q
    ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  11621957 agggtatttgattattctgtaccattggccatatatgtgaaataatttag 11622006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 37169869 - 37169935
Alignment:
Q  88 caaataaatatattatatataagacaacgagaacgaatataaatggtttgagaaacaccaaatgtga 154  Q
    |||||| ||||||||||||||||| || ||||| | ||||| |||||||||| ||||||||| ||||    
T  37169869 caaatagatatattatatataagaaaatgagaatggatatacatggtttgaggaacaccaaaggtga 37169935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 44474914 - 44474862
Alignment:
Q  88 caaataaatatattatatataagacaacgagaacgaatataaatggtttgaga 140  Q
    |||||||||||||||||||||||| || ||||| | ||||| ||||| |||||    
T  44474914 caaataaatatattatatataagaaaatgagaatggatatacatggtctgaga 44474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University