View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_high_2 (Length: 894)
Name: NF12820_high_2
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_2 |
 | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0197 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 56 - 878
Target Start/End: Original strand, 30353 - 31179
Alignment:
| Q |
56 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30353 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
30452 |
T |
|
| Q |
151 |
tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30453 |
tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
30552 |
T |
|
| Q |
250 |
cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30553 |
cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc |
30652 |
T |
|
| Q |
350 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30653 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaa-tattttctttctcttcaatttcttttc |
30751 |
T |
|
| Q |
450 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccg |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30752 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccg |
30851 |
T |
|
| Q |
550 |
gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30852 |
gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa |
30951 |
T |
|
| Q |
650 |
aacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctga |
749 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30952 |
aactt-cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctga |
31050 |
T |
|
| Q |
750 |
agcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaatt |
849 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051 |
agcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaatt |
31150 |
T |
|
| Q |
850 |
cgtggtgaaagggcttagaattcgttgct |
878 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31151 |
cgtggtgaaagggcttagaattcgttgct |
31179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 28316 - 28363
Alignment:
| Q |
11 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28316 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
28363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 208 - 878
Target Start/End: Original strand, 21317073 - 21317742
Alignment:
| Q |
208 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317073 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
21317172 |
T |
|
| Q |
308 |
cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21317173 |
cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc |
21317272 |
T |
|
| Q |
408 |
aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
507 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317273 |
aataacatctcaaa-tattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
21317371 |
T |
|
| Q |
508 |
cgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg |
607 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317372 |
cgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg |
21317471 |
T |
|
| Q |
608 |
aaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcag |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317472 |
aaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcag |
21317571 |
T |
|
| Q |
708 |
attccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagaga |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21317572 |
attccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagaga |
21317671 |
T |
|
| Q |
808 |
gttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaattcgttgct |
878 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21317672 |
gttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaattcgttgct |
21317742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 456 - 869
Target Start/End: Complemental strand, 3930343 - 3929930
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| ||| |
|
|
| T |
3930343 |
aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc |
3930244 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| || || ||||| |||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||||||||| ||||| || || ||||||| |
|
|
| T |
3930243 |
ggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttc |
3930144 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3930143 |
cattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgta |
3930044 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaattcgtggt |
855 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |
|
|
| T |
3930043 |
tcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggc |
3929944 |
T |
|
| Q |
856 |
gaaagggcttagaa |
869 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3929943 |
gaaagggcttagaa |
3929930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 21316816 - 21316983
Alignment:
| Q |
11 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
21316816 |
agcagagacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatg |
21316915 |
T |
|
| Q |
111 |
atattgcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21316916 |
atattgcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat |
21316983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 538 - 840
Target Start/End: Complemental strand, 3928909 - 3928607
Alignment:
| Q |
538 |
aaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagc |
637 |
Q |
| |
|
|||||||| | |||||| |||||| |||||||||||||| | ||| | || ||||| || || | ||||||||| | ||||| || |||| |||||||| |
|
|
| T |
3928909 |
aaatcagcactggcgacaggaggaatgaagaagccacacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagc |
3928810 |
T |
|
| Q |
638 |
ttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttca |
737 |
Q |
| |
|
|||| || || |||||||| ||| || | | |||| |||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
3928809 |
ttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttca |
3928710 |
T |
|
| Q |
738 |
agaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaactt |
837 |
Q |
| |
|
|||| |||||||| | | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
3928709 |
agaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaactt |
3928610 |
T |
|
| Q |
838 |
gca |
840 |
Q |
| |
|
||| |
|
|
| T |
3928609 |
gca |
3928607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 21314031 - 21314159
Alignment:
| Q |
11 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21314031 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatg |
21314130 |
T |
|
| Q |
111 |
atattgcgcttgagtcttattgaaaagaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21314131 |
atattgcgcttgagtcttattgaaaagaa |
21314159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 452 - 868
Target Start/End: Original strand, 13576090 - 13576506
Alignment:
| Q |
452 |
tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggc |
551 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
13576090 |
tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggc |
13576189 |
T |
|
| Q |
552 |
gaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaa |
651 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||| || |
|
|
| T |
13576190 |
caccggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaag |
13576289 |
T |
|
| Q |
652 |
cttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaag |
751 |
Q |
| |
|
|||||||||||| | | ||||| ||||| ||||||||||||||||| |||||| | || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576290 |
cttccattccaaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaag |
13576389 |
T |
|
| Q |
752 |
cttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaattcg |
851 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
13576390 |
cttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcag |
13576489 |
T |
|
| Q |
852 |
tggtgaaagggcttaga |
868 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
13576490 |
aggcgaaagggcttaga |
13576506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 565 - 839
Target Start/End: Complemental strand, 34571719 - 34571445
Alignment:
| Q |
565 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
664 |
Q |
| |
|
|||||||| || ||||| ||| |||||| || || |||||||| || || ||||| |||||||| || || ||| |||| | |||||||||||||| | |
|
|
| T |
34571719 |
aagaagcctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagc |
34571620 |
T |
|
| Q |
665 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
764 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||| | ||||||||||| ||| ||| || ||||| ||||| || ||||| ||| | ||||| |
|
|
| T |
34571619 |
gtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttgg |
34571520 |
T |
|
| Q |
765 |
tttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
34571519 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc |
34571445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 565 - 839
Target Start/End: Complemental strand, 34579187 - 34578913
Alignment:
| Q |
565 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
664 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
34579187 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagc |
34579088 |
T |
|
| Q |
665 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
764 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
34579087 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
34578988 |
T |
|
| Q |
765 |
tttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| | || ||||| ||||||||||||||||| |
|
|
| T |
34578987 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaacttgc |
34578913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 565 - 839
Target Start/End: Complemental strand, 34584936 - 34584662
Alignment:
| Q |
565 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
664 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
34584936 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagc |
34584837 |
T |
|
| Q |
665 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
764 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
34584836 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
34584737 |
T |
|
| Q |
765 |
tttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| | || ||||| ||||||||||||||||| |
|
|
| T |
34584736 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaacttgc |
34584662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 652 - 839
Target Start/End: Complemental strand, 34562841 - 34562651
Alignment:
| Q |
652 |
cttccattccaacgtcttgttcgtgaaatcgctcagg---atttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctg |
748 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | || |||| | ||| ||||||||||||| ||| ||| || ||||| ||||| || | |
|
|
| T |
34562841 |
cttccattccagcgtcttgttcgtgaaattgctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcgg |
34562742 |
T |
|
| Q |
749 |
aagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
|||| ||| | |||||||||||||| ||||| ||| | || || |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
34562741 |
aagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc |
34562651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 455 - 867
Target Start/End: Complemental strand, 43480057 - 43479645
Alignment:
| Q |
455 |
aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgac |
554 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
43480057 |
aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccac |
43479958 |
T |
|
| Q |
555 |
cggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaactt |
654 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||| || || || ||| |
|
|
| T |
43479957 |
cggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagctt |
43479858 |
T |
|
| Q |
655 |
ccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctt |
754 |
Q |
| |
|
||||||||| | | ||| | ||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
43479857 |
ccattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagctt |
43479758 |
T |
|
| Q |
755 |
atcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaattcgtgg |
854 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
43479757 |
atcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagagg |
43479658 |
T |
|
| Q |
855 |
tgaaagggcttag |
867 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
43479657 |
cgagagggcttag |
43479645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 457 - 848
Target Start/End: Original strand, 38799242 - 38799633
Alignment:
| Q |
457 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
556 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38799341 |
T |
|
| Q |
557 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
656 |
Q |
| |
|
||||||||||||||||||| | ||| | || ||||| || || | | || ||||| ||||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
38799342 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38799441 |
T |
|
| Q |
657 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
756 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38799442 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38799541 |
T |
|
| Q |
757 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaat |
848 |
Q |
| |
|
| |||||| | |||||||| || || ||||| || |||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
38799542 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaat |
38799633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 457 - 848
Target Start/End: Complemental strand, 38822275 - 38821884
Alignment:
| Q |
457 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
556 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38822176 |
T |
|
| Q |
557 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
656 |
Q |
| |
|
||||||||||||||||||| | ||| | || ||||| || || | | || ||||| ||||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
38822175 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38822076 |
T |
|
| Q |
657 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
756 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38822075 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38821976 |
T |
|
| Q |
757 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaat |
848 |
Q |
| |
|
| |||||| | |||||||| || || ||||| || |||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
38821975 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaat |
38821884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 456 - 839
Target Start/End: Original strand, 26591914 - 26592297
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
|||||||||||| || ||||| |||||||| ||||||||||| ||||| ||| | || || ||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
26591914 |
aatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgacc |
26592013 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| |||||||||||||||||||||||| | || |||||||| || || ||||| ||||||||||||||||||||||| || ||||| || | ||||||| |
|
|
| T |
26592014 |
ggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttc |
26592113 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
| ||||| |||||||||||||| || |||||||||||||| || |||||| | || |||||| |||||| || || || |||||||| || || ||||| |
|
|
| T |
26592114 |
ctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggctta |
26592213 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||||| |||||||| ||||| || || |||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
26592214 |
tcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttgc |
26592297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 456 - 839
Target Start/End: Original strand, 25865446 - 25865829
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
|||||| ||||| || ||||| || ||||||||||||||||| || || ||| | || |||||||| || ||||| ||| ||||||| ||||| | ||| |
|
|
| T |
25865446 |
aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccacc |
25865545 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| |||||||||||||| || |||| ||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||||||| |||| | || |||| |
|
|
| T |
25865546 |
ggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttc |
25865645 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
25865646 |
cattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggctta |
25865745 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
|||||| || |||||||| ||||| ||| | || || |||||||||||||| || || |||||||| ||||||||||| ||||| |
|
|
| T |
25865746 |
tcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgc |
25865829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 456 - 867
Target Start/End: Original strand, 41943690 - 41944101
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||||||| || || || ||| | || ||||| ||||| || || || || ||||| ||||| | ||| |
|
|
| T |
41943690 |
aatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaacc |
41943789 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| ||||| ||||| || || || | ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| ||| |||| | || |||| |
|
|
| T |
41943790 |
ggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttc |
41943889 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||| ||||||| ||| ||||| ||||| || |||||||| |
|
|
| T |
41943890 |
cattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagctta |
41943989 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaattcgtggt |
855 |
Q |
| |
|
||| ||||| |||||||| ||||| ||| | || || |||||||||||||| ||||| |||||||| ||||| |||||||||||| | | ||||||||| |
|
|
| T |
41943990 |
tctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggt |
41944089 |
T |
|
| Q |
856 |
gaaagggcttag |
867 |
Q |
| |
|
||| | |||||| |
|
|
| T |
41944090 |
gaacgtgcttag |
41944101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 787 - 848
Target Start/End: Original strand, 38807073 - 38807134
Alignment:
| Q |
787 |
tgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaat |
848 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
38807073 |
tgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaat |
38807134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 733 - 833
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
733 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
832 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||| ||||| ||| | || ||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
833 |
a |
833 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 457 - 839
Target Start/End: Complemental strand, 12547380 - 12546998
Alignment:
| Q |
457 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
556 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
12547380 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12547281 |
T |
|
| Q |
557 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
656 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
12547280 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12547181 |
T |
|
| Q |
657 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
756 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547180 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12547081 |
T |
|
| Q |
757 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12547080 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgc |
12546998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 457 - 836
Target Start/End: Original strand, 12531239 - 12531618
Alignment:
| Q |
457 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg |
556 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
12531239 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12531338 |
T |
|
| Q |
557 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
656 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
12531339 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12531438 |
T |
|
| Q |
657 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
756 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531439 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12531538 |
T |
|
| Q |
757 |
cttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
836 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
12531539 |
cttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
12531618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 458 - 836
Target Start/End: Complemental strand, 9867038 - 9866659
Alignment:
| Q |
458 |
tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccgg |
557 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| ||||| ||| | || | || ||||| ||||| || ||||||||||||||||| || || |
|
|
| T |
9867038 |
tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg |
9866939 |
T |
|
| Q |
558 |
aggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaag--taccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| ||||| ||||||| ||||||||| |||| || |||| |
|
|
| T |
9866938 |
aggagtgaagaagccacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttc |
9866841 |
T |
|
| Q |
656 |
cattccaacgtct--tgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagct |
753 |
Q |
| |
|
| || || | || | | | |||| ||| |||||||||| || ||||| || ||| |||| |||| ||||||||||||||||||||||||| ||| |
|
|
| T |
9866840 |
cgtttcagagactgatctgagggaaa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagac |
9866742 |
T |
|
| Q |
754 |
tatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
836 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
9866741 |
tatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgaggacatccaact |
9866659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 448 - 839
Target Start/End: Original strand, 9894390 - 9894771
Alignment:
| Q |
448 |
tcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctc |
547 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| || ||||| ||||| ||||| || || || ||||| |||||||| || |||||||||| |
|
|
| T |
9894390 |
tcaatcaccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctc |
9894486 |
T |
|
| Q |
548 |
cggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag |
647 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||| ||| ||||| || || |||||||| ||||| || ||||||| ||||||| ||| ||||| |
|
|
| T |
9894487 |
tggcagccggaacagtgaagaagccacaccatttttgtcatggaacggttgctcttcgtgagatccgtaattaccagaggagcact-----tctaataag |
9894581 |
T |
|
| Q |
648 |
aaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgct |
747 |
Q |
| |
|
|| ||||| || || | ||||| | ||||| |||||||||| ||| || | ||| || |||||||| ||||||||||||||| ||||||||| || | |
|
|
| T |
9894582 |
gaagcttccgtttcagagacttgtgagggaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgtt |
9894680 |
T |
|
| Q |
748 |
gaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||| | ||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| | ||||||||| ||||||| |
|
|
| T |
9894681 |
gaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatggc-aaggatattgaacttgc |
9894771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 723 - 831
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
723 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcct |
822 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
823 |
aaggatatt |
831 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 694 - 818
Target Start/End: Original strand, 38735501 - 38735625
Alignment:
| Q |
694 |
aaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgcta |
793 |
Q |
| |
|
||||| |||||||| ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
794 |
ttcatgctaagagagttactattat |
818 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttacaattat |
38735625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 538 - 656
Target Start/End: Original strand, 9869843 - 9869961
Alignment:
| Q |
538 |
aaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagc |
637 |
Q |
| |
|
|||||||||| ||| ||||| | ||||||||| |||||| ||||| ||| |||||||| || |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9869843 |
aaatcagctctggcaaccggggcagtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagc |
9869942 |
T |
|
| Q |
638 |
ttctgataagaaaacttcc |
656 |
Q |
| |
|
|||| ||||| || ||||| |
|
|
| T |
9869943 |
ttctaataaggaagcttcc |
9869961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 774 - 848
Target Start/End: Original strand, 9903555 - 9903627
Alignment:
| Q |
774 |
agatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgcaagaagaat |
848 |
Q |
| |
|
|||||||||| ||||| |||| ||||||| || ||||||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
9903555 |
agatacgaatatttgc--tatttatgctaaaagcgttactattatacctaaggatattcaacttgccaaaagaat |
9903627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 790 - 836
Target Start/End: Original strand, 12538678 - 12538724
Alignment:
| Q |
790 |
gctattcatgctaagagagttactattatgcctaaggatattcaact |
836 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
12538678 |
gctattcatgctaagagagttactatcatgcctaaaggtattcaact |
12538724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 456 - 836
Target Start/End: Original strand, 24860292 - 24860672
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||| |
|
|
| T |
24860292 |
aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc |
24860391 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| |
|
|
| T |
24860392 |
ggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttc |
24860491 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860492 |
cattccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagctta |
24860591 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
836 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
24860592 |
tctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaact |
24860672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 456 - 830
Target Start/End: Original strand, 34748501 - 34748875
Alignment:
| Q |
456 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc |
555 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| || ||||| |||||||| ||| |
|
|
| T |
34748501 |
aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccacc |
34748600 |
T |
|
| Q |
556 |
ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc |
655 |
Q |
| |
|
|| ||||||||||| || ||||||||| | || |||||||| || || ||||| ||||| ||||||||||||||||| || || || || | ||||| | |
|
|
| T |
34748601 |
ggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactcc |
34748700 |
T |
|
| Q |
656 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
755 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||||||||||||| || |||||| | ||||||||| || || || || || |||||||| ||||| ||||| |
|
|
| T |
34748701 |
ccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggctta |
34748800 |
T |
|
| Q |
756 |
tcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaaggatat |
830 |
Q |
| |
|
||| |||||| | ||||| ||||| || || || || |||||||| ||| | || ||||| |||||||||||||| |
|
|
| T |
34748801 |
tctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatat |
34748875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 654 - 710
Target Start/End: Complemental strand, 44771153 - 44771097
Alignment:
| Q |
654 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagatt |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagatt |
44771097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
| Q |
694 |
aaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgcta |
793 |
Q |
| |
|
||||| |||||||| ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| || ||||| | | |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
794 |
ttcatgctaagag |
806 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53290820 |
ttcatgctaagag |
53290832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 827
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
736 |
caagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaagga |
827 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | ||||| || || || | || ||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 827
Target Start/End: Original strand, 40045370 - 40045461
Alignment:
| Q |
736 |
caagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatgctaagagagttactattatgcctaagga |
827 |
Q |
| |
|
||||| |||||||| || |||||||||||| | ||||| || || || | |||||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
40045370 |
caagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaagga |
40045461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 686 - 778
Target Start/End: Complemental strand, 17769314 - 17769222
Alignment:
| Q |
686 |
aggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagata |
778 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||| ||| |||||| |
|
|
| T |
17769314 |
aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttttttttaagata |
17769222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 839
Target Start/End: Complemental strand, 7594269 - 7594130
Alignment:
| Q |
700 |
gatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacgaatctttgcgctattcatg |
799 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||| ||||| ||||| ||||| ||||| || ||||| |||||||| || || ||||| || || ||||||| |
|
|
| T |
7594269 |
gatctgagattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatg |
7594170 |
T |
|
| Q |
800 |
ctaagagagttactattatgcctaaggatattcaacttgc |
839 |
Q |
| |
|
||||||| || || |||||||| ||||||||||| ||||| |
|
|
| T |
7594169 |
ctaagagggtgacaattatgccaaaggatattcagcttgc |
7594130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 695
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
| Q |
605 |
gtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaa |
695 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||| |||| | || |||||||| || |||||||| |||||||| ||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 689 - 778
Target Start/End: Complemental strand, 1539263 - 1539174
Alignment:
| Q |
689 |
atttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagata |
778 |
Q |
| |
|
|||||||||| |||||| |||| |||| ||| |||||||| ||||||||||||| || |||||||||||||||||| ||| |||||| |
|
|
| T |
1539263 |
atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttttttttaagata |
1539174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 767
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
| Q |
686 |
aggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
767 |
Q |
| |
|
||||||||||||| |||||| |||| |||| || ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27440873 |
aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
27440954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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