View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_22 (Length: 410)
Name: NF12820_high_22
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 3881312 - 3880925
Alignment:
| Q |
19 |
gtactacgggtggtattatctttctctttctgctcttctggttgagaa--gttatacatatttttcagaaacattagcgcacacaatagtcgctttctgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
3881312 |
gtactacgggtggtattatctttctctttctgctcttctggttgagaatagttatacatatttttcagaaagattagcacacacaatagtcgctttctgt |
3881213 |
T |
|
| Q |
117 |
agccaaaaatgtaaagtgcagtgatttgaaatttaaaaaagttgaatacaatacatcgagattttgggactgcatctgcatttgctgatcctgcttgtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3881212 |
agccaaaaatgtaaagtgcagtgatttgaaatttaaaaaagttgaatacaatacatcgagattttgggactgcatctgcatttgctgatcctgcttgtgt |
3881113 |
T |
|
| Q |
217 |
tgaggttctccagctctaacagtttggtccattatctgtatcatcatgaaattagtttgcgctgaaaagatcaatttttcaccgttccaaaaaagaaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3881112 |
tgaggttctccagctctaacagtttggtccattatctgtatcatcatgaaattagtttgcgctgaaaagatcaatttttcaccgttccaaaaaagaaaat |
3881013 |
T |
|
| Q |
317 |
cagggttcttcttttaaaatttatgataacctaccgggacacattctctaggtgctacgggtgctgttatctttctctttcttctctc |
404 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3881012 |
cagggttcttcttttaaaatttatgataacctactgggacacattctctaggtgctacgggtgctgttatctttctctttcttctctc |
3880925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 3880958 - 3880700
Alignment:
| Q |
22 |
ctacgggtggtattatctttctctttctgctcttctggttgagaa--gttatacatatttttcagaaacattagcgcacacaatagtcgctttctgtagc |
119 |
Q |
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||||||||| | |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||||| |||||| |||||| || ||||||| || |
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| T |
3880958 |
ctacgggtgctgttatctttctctttcttctctcctgattgagaataggtatacatatttttcagaaagattagc----acaataatcactttctgatgc |
3880863 |
T |
|
| Q |
120 |
caaaaatgtaaagtgcagtgatttgaaatttaaaaaagttgaatacaatacatcgagattttgggactgcatctgcatttgctgatcctgcttgtgttga |
219 |
Q |
| |
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||| || ||||||||| |||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3880862 |
caacaaggtaaagtgcggtgatttggaattttaaaaagttgaataccatacatagagattttgggactgcatctgcatttgctgatcctgcttgcattga |
3880763 |
T |
|
| Q |
220 |
ggttctccagctctaacagtttggtccattatctgtatcatcatgaaattagtttgcgctgaa |
282 |
Q |
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||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
3880762 |
ggttctccagctccaacagtttggtccaccagctgtatcatcatgaaattagtttgcgctgaa |
3880700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 42 - 282
Target Start/End: Complemental strand, 3881898 - 3881661
Alignment:
| Q |
42 |
ctctttctgctcttctggttgagaa--gttatacatatttttcagaaacattagcgcacacaatagtcgctttctgtagccaaaaatgtaaagtgcagtg |
139 |
Q |
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||||||||||||||||| ||||||| | | ||||||||| ||||| ||||||| |||||| || |||||||| ||||| || ||||||||||||| |
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| T |
3881898 |
ctctttctgctcttctgattgagaataggtgcacatattttgcagaa-cattagc----acaataatcactttctgttgccaataaggtaaagtgcagtg |
3881804 |
T |
|
| Q |
140 |
atttgaaatttaaaaaagttgaatacaatacatcgagattttgggactgcatctgcatttgctgatcctgcttgtgttgaggttctccagctctaacagt |
239 |
Q |
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| ||| ||||| ||||| |||||||| |||| |||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
3881803 |
aattggaattttaaaaacttgaataccatacgtcgagattttgggactgcgtctgcaatggctgatcctgcttgaattgaggttctccagctctaacagt |
3881704 |
T |
|
| Q |
240 |
ttggtccattatctgtatcatcatgaaattagtttgcgctgaa |
282 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
3881703 |
ttggtccatcatctgtaccatcatgaaattagtttgcgctgaa |
3881661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 3881352 - 3881277
Alignment:
| Q |
328 |
ttttaaaatttatgataacctaccgggacacattctctaggtgctacgggtgctgttatctttctctttcttctct |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||| |||| |
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|
| T |
3881352 |
ttttaaaatttatgataacctaccgggacacattctccaggtactacgggtggtattatctttctctttctgctct |
3881277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 3881945 - 3881886
Alignment:
| Q |
344 |
aacctaccgggacacattctctaggtgctacgggtgctgttatctttctctttcttctct |
403 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||| |
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| T |
3881945 |
aacctaccgggacacattctctagatgctacgggtgctgtcatattcctctttctgctct |
3881886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 30342215 - 30342176
Alignment:
| Q |
344 |
aacctaccgggacacattctctaggtgctacgggtgctgt |
383 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
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| T |
30342215 |
aacctaccaggacacattctctaggtgctacgggtgctgt |
30342176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 18987550 - 18987587
Alignment:
| Q |
344 |
aacctaccgggacacattctctaggtgctacgggtgct |
381 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
18987550 |
aacctaccaggacacattctctaggtgctacgggtgct |
18987587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 23917973 - 23917936
Alignment:
| Q |
344 |
aacctaccgggacacattctctaggtgctacgggtgct |
381 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
23917973 |
aacctaccaggacacattctctaggtgctacgggtgct |
23917936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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