View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_23 (Length: 391)
Name: NF12820_high_23
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 48170632 - 48170916
Alignment:
| Q |
1 |
aattacttgagccaatgatcttgcattagccttctttatagtgatgctgctaaacaaacttatcatattggataaaataaaccgatataatctatcataa |
100 |
Q |
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| T |
48170632 |
aattacttgagccaatgatcttgcattagccttctttatagtgatgctgctaaacaaacttatcatattggataaaataaaccgatataatctatcataa |
48170731 |
T |
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| Q |
101 |
ctactcaaacaaattttcaatggcttgttgtatatctatctaactagttgaattgctagaataaaatagctatttgagtttctgatcaataggacagaca |
200 |
Q |
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| T |
48170732 |
ctactcaaacaaattttcaatggcttgttgtatatctatctaactagttgaattgctagaataaaatagctatttgagtttctgatcaataggacagaca |
48170831 |
T |
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| Q |
201 |
atatataagatttgtttcctgtatgataattatatgtaattgtgacaacagtaataagaaataatataatacaaacaagggtcac |
285 |
Q |
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| T |
48170832 |
atatataagatttgtttcctgtatgataattatatgtaattgtgacaacagtaataagaaataatataatacaaacaagggtcac |
48170916 |
T |
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Back To:
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 48170913 - 48170965
Alignment:
| Q |
321 |
tcacggttatcttcacacttgttcttgaactaaaggtaaatacatgcatttag |
373 |
Q |
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| T |
48170913 |
tcacggttatcttcacacttgttcttgaactaaaggtaaatacatgaatttag |
48170965 |
T |
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