View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_24 (Length: 389)
Name: NF12820_high_24
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 29068273 - 29068639
Alignment:
| Q |
1 |
ggaattccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaaccacaaaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068273 |
ggaattccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaaccacaaaccatg |
29068372 |
T |
|
| Q |
101 |
aaatgtaacgttata--nnnnnnnncaaaaac--aaatacannnnnnnagtaataataattaatgaagaattgtaccaattaatgaaggtggtactacta |
196 |
Q |
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||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29068373 |
aaatgtaacgttatattttttttttcaaaaacataaatacatttttttagtaataat------tgaagaattgtaccaattaatgaaggtggtactacta |
29068466 |
T |
|
| Q |
197 |
ataaattgcagtnnnnnnncaacatgtgacagaact----gtcagtactcaacaactcagtgatnnnnnnnnnnnnnnnnntgtaacaagtaacaactct |
292 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29068467 |
ataaattgcagtaaaaaaacaacatgtgacagaactgtcagtcagtactcaacaactcagtgataaaaaaatttgaaaaaatgtaacaagtaacaactct |
29068566 |
T |
|
| Q |
293 |
atgtagatgatacatatgattgagaatcaaatctagtattattcattcttcaatctcaaccttcaaaactaac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29068567 |
atgtagatgatacatatgattgagaatcaaatctagtactattcattcttcaatctcaaccttcaaaactaac |
29068639 |
T |
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