View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_28 (Length: 357)
Name: NF12820_high_28
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 48010214 - 48010551
Alignment:
| Q |
1 |
ctcaccataacgttctcgttagttccttggcttttctggtatcaatctgcaaccaatttgttttcgtagggcatatcatctttcgttttcgtttgtttta |
100 |
Q |
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| T |
48010214 |
ctcaccataacgttctcgttagttccttggcttttctggtatcaatctgcaaccaatttgttttcatagggcatatcatctttcattttcgtttgtttta |
48010313 |
T |
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| Q |
101 |
taagtattttaatattttaaaacctatttgcttttcaggttgacttaactccagaaaagcattgatatgtttttgtttgcccggttacgaatgatgaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
48010314 |
taagtattttaatattttaaaacctatttgcttttcaggttgacttaactccagaaaagtattgatatatttttgtttgcccggttacgaatgatgaggt |
48010413 |
T |
|
| Q |
201 |
aactatagtgtaagttccatttccgatttggttcataatagtgattgacatcatatatgatatatccatgttagtgtaagtatttattttttaggtattg |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48010414 |
aactatagtgtaagttcaatttccgatttggttcataatagtgattgacatcatatatgatatatccctgttagtgtaagtatttattttttaggtattg |
48010513 |
T |
|
| Q |
301 |
cttaaaatctatttgaacccataattccaatcatcttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48010514 |
cttaaaatctatttgaacccataattccaatcatcttt |
48010551 |
T |
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