View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_3 (Length: 796)
Name: NF12820_high_3
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 1 - 783
Target Start/End: Complemental strand, 43186803 - 43186018
Alignment:
| Q |
1 |
tcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatcctttttaatgtttgattattttagtataaaaatatattg |
100 |
Q |
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| T |
43186803 |
tcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatgctttttaatgtttgattatgttagtataaaaatatattg |
43186704 |
T |
|
| Q |
101 |
gttaataacgagtccggatgaatttcggcgatgaataatgaaaatgaatgaatttatgttatgaagaacgagtcagagtgaatttcgaagatggaatgaa |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186703 |
gttaataacgagtccggatgaatttctgcgatgaataatgaaaattaatgaatttatgttatgaagaacgagtcagagtgaatttcgaagatggaatgaa |
43186604 |
T |
|
| Q |
201 |
aatgagtgttgtggattcctata-gttaagattcaagtggcattgtccaaagatccaagtggggcctaattgtcatagtgtgaagttgtcaaagcttagg |
299 |
Q |
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| T |
43186603 |
aatgagtgttgtggattcctaaaagttaagattcaagtggcattgtccaaagatgcaagtggggcctaattgtcatagtgtgaagttgtcaaagcttagg |
43186504 |
T |
|
| Q |
300 |
agggatgggtagcatgcaagcagaaggctacacaattggtttgctacatcgagtatctgttgccaatagacgatagtagccgcggtagtggccgtgatag |
399 |
Q |
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| T |
43186503 |
agggatgggtagcatgcaagcaggaggctaccaaattggtttgctacattgagtatctgttgccaatagacgatagtagccgcggtggtggctgtgatag |
43186404 |
T |
|
| Q |
400 |
cggagcagctgccttccgccccccatgcagaggtccggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagtttttatcatcatt |
499 |
Q |
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| T |
43186403 |
cggagcagctgccttccgccccccatgcagaggtccggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagttgtaatcatcatt |
43186304 |
T |
|
| Q |
500 |
gttgttaaatagcagctgt--atagctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaac |
597 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186303 |
gttgttaaatagcagctgtacatagctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaac |
43186204 |
T |
|
| Q |
598 |
cattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgttttagcttcataacatctgaagaaatgttgagtt |
697 |
Q |
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| T |
43186203 |
cattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgtttcagcttcataacatctgaagaaatgttgactt |
43186104 |
T |
|
| Q |
698 |
agcaaccattttccgctctgcgatgtaggttttccagaggttagagnnnnnnngcaacaagtgccaggcttgtgctcttcacaggt |
783 |
Q |
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| T |
43186103 |
agcaaccattttccactctgcgatgtaggttttccagaggttagaggttttttgcaacaagtgccaggcttgtgctcttcacaggt |
43186018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 23609379 - 23609323
Alignment:
| Q |
173 |
tcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctatagttaag |
229 |
Q |
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| T |
23609379 |
tcagagtgaatttcactggtggaatgaaaatgagtgttgtggaatcctacagttaag |
23609323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 23622844 - 23622784
Alignment:
| Q |
161 |
atgaagaacgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattccta |
221 |
Q |
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|||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||| |
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| T |
23622844 |
atgaagaatgattcagagtaaatttcggtggtggaatgaaaatgagtgatgtggattccta |
23622784 |
T |
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